Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10913158	0.82[ASN][1000 genomes]
rs16849645	1.00[EUR][1000 genomes]
rs16849697	0.83[EUR][1000 genomes]
rs16849735	0.85[CHB][hapmap]
rs16849763	0.80[ASN][1000 genomes]
rs16849829	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2136545	1.00[EUR][1000 genomes]
rs4652154	1.00[EUR][1000 genomes]
rs4652155	1.00[EUR][1000 genomes]
rs4652170	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4652174	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4652176	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55826684	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58408024	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59276566	1.00[EUR][1000 genomes]
rs73042795	1.00[EUR][1000 genomes]
rs73042800	1.00[EUR][1000 genomes]
rs74129027	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74129030	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74129032	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs74129041	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7525001	0.85[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831970	chr1:176386162-176569207	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:176406200-176415600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:176408800-176410000	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr1:176409400-176410000	Enhancers	Placenta	Placenta

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