Variant report

Variant	rs16849763
Chromosome Location	chr1:176299318-176299319
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10798449	0.85[ASN][1000 genomes]
rs10913158	0.97[ASN][1000 genomes]
rs11801582	0.85[ASN][1000 genomes]
rs13328721	0.80[ASN][1000 genomes]
rs16849571	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16849645	0.80[ASN][1000 genomes]
rs16849697	0.85[ASN][1000 genomes]
rs16849829	0.80[ASN][1000 genomes]
rs2136545	0.85[ASN][1000 genomes]
rs4650938	0.85[ASN][1000 genomes]
rs4652170	0.90[ASN][1000 genomes]
rs4652174	0.80[ASN][1000 genomes]
rs4652176	0.80[ASN][1000 genomes]
rs55826684	0.80[ASN][1000 genomes]
rs58408024	0.80[ASN][1000 genomes]
rs59276566	0.85[ASN][1000 genomes]
rs74129027	0.80[ASN][1000 genomes]
rs74129030	0.80[ASN][1000 genomes]
rs74129041	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1823794	chr1:175869554-176311778	Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:176295000-176300000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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