Variant report

Variant	rs4650938
Chromosome Location	chr1:176259611-176259612
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10798449	1.00[ASN][1000 genomes]
rs10913150	0.87[ASN][1000 genomes]
rs10913158	0.82[ASN][1000 genomes]
rs11801582	1.00[ASN][1000 genomes]
rs16849645	0.95[ASN][1000 genomes]
rs16849697	1.00[ASN][1000 genomes]
rs16849763	0.85[ASN][1000 genomes]
rs2136545	1.00[ASN][1000 genomes]
rs2502847	0.82[ASN][1000 genomes]
rs471534	0.85[ASN][1000 genomes]
rs533403	0.87[ASN][1000 genomes]
rs553852	0.82[ASN][1000 genomes]
rs56367284	0.82[ASN][1000 genomes]
rs580978	0.87[ASN][1000 genomes]
rs59276566	1.00[ASN][1000 genomes]
rs611883	0.82[ASN][1000 genomes]
rs61821029	0.82[ASN][1000 genomes]
rs704827	0.82[ASN][1000 genomes]
rs704832	0.92[ASN][1000 genomes]
rs791744	0.85[ASN][1000 genomes]
rs791795	0.81[ASN][1000 genomes]
rs791800	0.87[ASN][1000 genomes]
rs791801	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1823794	chr1:175869554-176311778	Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv525586	chr1:176224746-176277052	Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1008833	chr1:176232985-176276375	Enhancers Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv548247	chr1:176233932-176277052	Enhancers Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv274991	chr1:176256617-176268044	ZNF genes & repeats Active TSS Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:176259000-176259800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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