Variant report
| Variant | rs10798449 |
|---|---|
| Chromosome Location | chr12:118063066-118063067 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:33)
| rs_ID | r2[population] |
|---|---|
| rs10913150 | 0.87[ASN][1000 genomes] |
| rs10913158 | 0.82[ASN][1000 genomes] |
| rs11801582 | 1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12125604 | 0.87[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs12126441 | 0.87[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs12137387 | 0.82[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs12140384 | 0.85[EUR][1000 genomes] |
| rs12143236 | 0.83[EUR][1000 genomes] |
| rs12407844 | 0.81[EUR][1000 genomes] |
| rs16849645 | 0.95[ASN][1000 genomes] |
| rs16849697 | 1.00[ASN][1000 genomes] |
| rs16849763 | 0.85[ASN][1000 genomes] |
| rs2136545 | 1.00[ASN][1000 genomes] |
| rs2502847 | 0.82[ASN][1000 genomes] |
| rs41378151 | 0.83[EUR][1000 genomes] |
| rs4650938 | 1.00[ASN][1000 genomes] |
| rs471534 | 0.85[ASN][1000 genomes] |
| rs533403 | 0.87[ASN][1000 genomes] |
| rs553852 | 0.82[ASN][1000 genomes] |
| rs56367284 | 0.82[ASN][1000 genomes] |
| rs580978 | 0.87[ASN][1000 genomes] |
| rs58715931 | 0.81[EUR][1000 genomes] |
| rs59276566 | 1.00[ASN][1000 genomes] |
| rs60617532 | 0.89[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs611883 | 0.82[ASN][1000 genomes] |
| rs61821029 | 0.82[ASN][1000 genomes] |
| rs61821081 | 0.81[EUR][1000 genomes] |
| rs704827 | 0.82[ASN][1000 genomes] |
| rs704832 | 0.92[ASN][1000 genomes] |
| rs791744 | 0.85[ASN][1000 genomes] |
| rs791795 | 0.81[ASN][1000 genomes] |
| rs791800 | 0.87[ASN][1000 genomes] |
| rs791801 | 0.83[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832527 | chr12:117974007-118110244 | Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:118061000-118075000 | Weak transcription | HUVEC | blood vessel |
