Variant report
| Variant | rs12140384 |
|---|---|
| Chromosome Location | chr1:176341238-176341239 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:176175519..176177756-chr1:176341116..176344107,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000236021 | Chromatin interaction |
| ENSG00000143207 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:12)
| rs_ID | r2[population] |
|---|---|
| rs10798449 | 0.85[EUR][1000 genomes] |
| rs11801582 | 0.87[EUR][1000 genomes] |
| rs12125604 | 0.88[EUR][1000 genomes] |
| rs12126441 | 0.88[EUR][1000 genomes] |
| rs12137387 | 0.83[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs12143236 | 1.00[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs12407844 | 0.94[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs41378151 | 1.00[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs58715931 | 0.97[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs60617532 | 0.90[EUR][1000 genomes] |
| rs61821081 | 0.94[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs61821096 | 0.84[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
