Variant report

Variant	rs12407844
Chromosome Location	chr1:176386373-176386374
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10798449	0.81[EUR][1000 genomes]
rs11801582	0.83[EUR][1000 genomes]
rs12125604	0.83[EUR][1000 genomes]
rs12126441	0.83[EUR][1000 genomes]
rs12137387	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12140384	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12143236	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16849735	0.90[CEU][hapmap]
rs41378151	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs58715931	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs60617532	0.85[EUR][1000 genomes]
rs61821081	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61821096	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831970	chr1:176386162-176569207	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:176385400-176389600	Enhancers	Dnd41	blood
2	chr1:176385800-176386400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr1:176386000-176386400	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr1:176386200-176386800	Enhancers	HUES6 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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