Variant report

Variant	rs60617532
Chromosome Location	chr1:176193945-176193946
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10798449	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11801582	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12117748	0.82[EUR][1000 genomes]
rs12125604	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12126441	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12137387	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12140384	0.90[EUR][1000 genomes]
rs12143236	0.87[EUR][1000 genomes]
rs12407844	0.85[EUR][1000 genomes]
rs41378151	0.87[EUR][1000 genomes]
rs58715931	0.85[EUR][1000 genomes]
rs61821081	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1823794	chr1:175869554-176311778	Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:176177600-176198600	Weak transcription	Brain Cingulate Gyrus	brain
2	chr1:176186000-176221400	Weak transcription	Brain Angular Gyrus	brain
3	chr1:176193200-176194000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr1:176193600-176195000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr1:176193600-176195200	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr1:176193600-176195200	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr1:176193600-176195200	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr1:176193800-176195200	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr1:176193800-176195200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr1:176193800-176195400	Enhancers	Duodenum Mucosa	Duodenum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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