Variant report

Variant	rs12137387
Chromosome Location	chr1:176207421-176207422
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10798449	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11801582	0.93[EUR][1000 genomes]
rs12117748	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12125604	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12126441	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12140384	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12143236	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12407844	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs41378151	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs58715931	0.84[EUR][1000 genomes]
rs60617532	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61821081	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1823794	chr1:175869554-176311778	Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:176186000-176221400	Weak transcription	Brain Angular Gyrus	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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