The 2.0 version of rSNPBase

Variant report

Variant rs471534
Chromosome Location chr1:176145277-176145278
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:118 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:176065600-176154800 Weak transcription Aorta Aorta
2 chr1:176070400-176151400 Weak transcription Pancreas Pancrea
3 chr1:176100800-176153200 Weak transcription Colonic Mucosa Colon
4 chr1:176110600-176164000 Weak transcription NHLF lung
5 chr1:176116000-176146200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
6 chr1:176123800-176150000 Weak transcription Osteobl bone
7 chr1:176126400-176168800 Weak transcription Small Intestine intestine
8 chr1:176127000-176147000 Weak transcription Primary T killer memory cells from peripheral blood blood
9 chr1:176127000-176174000 Weak transcription Colon Smooth Muscle Colon
10 chr1:176127200-176153400 Weak transcription Brain Inferior Temporal Lobe brain
11 chr1:176127400-176153400 Weak transcription Stomach Smooth Muscle stomach
12 chr1:176127400-176155400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
13 chr1:176128000-176147000 Weak transcription Stomach Mucosa stomach
14 chr1:176128000-176157800 Weak transcription Spleen Spleen
15 chr1:176128000-176175200 Weak transcription Esophagus oesophagus
16 chr1:176128400-176154600 Weak transcription Rectal Smooth Muscle rectum
17 chr1:176128600-176147000 Weak transcription Primary T killer naive cells fromperipheralblood blood
18 chr1:176128600-176147200 Strong transcription Monocytes-CD14+_RO01746 blood
19 chr1:176128600-176155600 Weak transcription iPS-18 Cell Line embryonic stem cell
20 chr1:176128800-176152800 Weak transcription Brain Cingulate Gyrus brain
21 chr1:176128800-176152800 Weak transcription Placenta Amnion Placenta Amnion
22 chr1:176128800-176154200 Weak transcription Skeletal Muscle Male skeletal muscle
23 chr1:176132200-176154200 Weak transcription NH-A brain
24 chr1:176134400-176152800 Weak transcription Brain Angular Gyrus brain
25 chr1:176136200-176147400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
26 chr1:176137400-176173000 Weak transcription Right Ventricle heart
27 chr1:176138200-176155800 Weak transcription ES-I3 Cell Line embryonic stem cell
28 chr1:176138600-176146200 Strong transcription Primary monocytes fromperipheralblood blood
29 chr1:176138800-176145400 Strong transcription Primary neutrophils fromperipheralblood blood
30 chr1:176138800-176146000 Strong transcription Liver Liver
31 chr1:176138800-176146200 Strong transcription Primary T cells fromperipheralblood blood
32 chr1:176138800-176155400 Weak transcription iPS-15b Cell Line embryonic stem cell
33 chr1:176139000-176145400 Strong transcription Fetal Thymus thymus
34 chr1:176139000-176153800 Strong transcription Dnd41 blood
35 chr1:176139200-176146000 Strong transcription Primary T cells from cord blood blood
36 chr1:176139400-176146000 Strong transcription Duodenum Mucosa Duodenum
37 chr1:176139800-176149200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
38 chr1:176139800-176152600 Weak transcription Brain Anterior Caudate brain
39 chr1:176140000-176155800 Weak transcription Fetal Brain Female brain
40 chr1:176140000-176157800 Weak transcription H1 Cell Line embryonic stem cell
41 chr1:176140000-176168200 Weak transcription Psoas Muscle Psoas
42 chr1:176140200-176150200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
43 chr1:176140200-176152200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
44 chr1:176140600-176146000 Strong transcription Primary hematopoietic stem cells short term culture blood
45 chr1:176140600-176148200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
46 chr1:176140800-176146000 Strong transcription Primary B cells from cord blood blood
47 chr1:176140800-176146000 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
48 chr1:176140800-176146800 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
49 chr1:176140800-176148400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
50 chr1:176140800-176149200 Weak transcription Brain Hippocampus Middle brain

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Last update: Aug 31, 2015