Variant report

Variant	rs704832
Chromosome Location	chr1:176185634-176185635
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:176176870..176178715-chr1:176185078..176187298,2	MCF-7	breast:
2	chr1:176175244..176178958-chr1:176179061..176187498,12	MCF-7	breast:
3	chr1:176176379..176180688-chr1:176183310..176186047,5	K562	blood:

Variant related genes	Relation type
ENSG00000236021	Chromatin interaction
ENSG00000143207	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10798449	0.92[ASN][1000 genomes]
rs10913150	0.92[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs10913158	0.80[EUR][1000 genomes]
rs11801582	0.92[ASN][1000 genomes]
rs16849645	0.97[ASN][1000 genomes]
rs16849697	0.92[ASN][1000 genomes]
rs16849735	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs1770643	0.85[ASN][1000 genomes]
rs2039231	1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2136545	0.92[ASN][1000 genomes]
rs2481627	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2481634	0.85[ASN][1000 genomes]
rs2481641	0.92[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap]
rs2481647	1.00[JPT][hapmap]
rs2481657	1.00[JPT][hapmap]
rs2502822	0.92[CHD][hapmap];1.00[JPT][hapmap]
rs2502826	0.92[CHD][hapmap];1.00[JPT][hapmap]
rs2502830	0.80[ASN][1000 genomes]
rs2502832	0.91[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2502834	0.92[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2502835	1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2502836	0.84[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2502841	0.92[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2502842	1.00[JPT][hapmap]
rs2502847	0.90[ASN][1000 genomes]
rs4129061	1.00[JPT][hapmap]
rs4650934	0.80[ASN][1000 genomes]
rs4650938	0.92[ASN][1000 genomes]
rs471534	0.92[ASN][1000 genomes]
rs533403	0.95[ASN][1000 genomes]
rs553852	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs56367284	0.90[ASN][1000 genomes]
rs580978	0.86[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs59276566	0.92[ASN][1000 genomes]
rs611883	0.90[ASN][1000 genomes]
rs61821029	0.90[ASN][1000 genomes]
rs6687043	0.95[GIH][hapmap];0.88[TSI][hapmap]
rs704827	0.84[CHD][hapmap];0.90[ASN][1000 genomes]
rs704830	0.86[CHB][hapmap]
rs704831	0.86[CHB][hapmap]
rs7525001	0.94[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs791744	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs791795	0.88[ASN][1000 genomes]
rs791800	0.95[ASN][1000 genomes]
rs791801	0.91[CHD][hapmap];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1823794	chr1:175869554-176311778	Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:176177600-176198600	Weak transcription	Brain Cingulate Gyrus	brain
2	chr1:176178200-176189400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr1:176178200-176193800	Weak transcription	Pancreas	Pancrea
4	chr1:176185200-176185800	Weak transcription	Brain Angular Gyrus	brain

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