Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10798449	0.82[ASN][1000 genomes]
rs10913150	0.92[CHD][hapmap];1.00[JPT][hapmap]
rs11801582	0.82[ASN][1000 genomes]
rs13328721	0.82[ASN][1000 genomes]
rs16849697	0.82[ASN][1000 genomes]
rs16849735	1.00[JPT][hapmap]
rs16849763	0.97[ASN][1000 genomes]
rs16849829	0.82[ASN][1000 genomes]
rs2136545	0.82[ASN][1000 genomes]
rs2861745	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4650938	0.82[ASN][1000 genomes]
rs4652170	0.92[ASN][1000 genomes]
rs4652174	0.82[ASN][1000 genomes]
rs4652176	0.82[ASN][1000 genomes]
rs553852	1.00[JPT][hapmap]
rs55826684	0.82[ASN][1000 genomes]
rs580978	1.00[JPT][hapmap]
rs58408024	0.82[ASN][1000 genomes]
rs59276566	0.82[ASN][1000 genomes]
rs704827	0.84[CHD][hapmap]
rs704832	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap];0.80[EUR][1000 genomes]
rs74129027	0.82[ASN][1000 genomes]
rs74129030	0.82[ASN][1000 genomes]
rs74129041	0.82[ASN][1000 genomes]
rs7525001	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs791744	1.00[JPT][hapmap]
rs791801	0.91[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1823794	chr1:175869554-176311778	Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10913158	TNFSF4	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:176311200-176312600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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