The 2.0 version of rSNPBase

Variant report

Variant rs598177
Chromosome Location chr1:176129910-176129911
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:114 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:176054400-176131600 Weak transcription NH-A brain
2 chr1:176055000-176141600 Weak transcription Hela-S3 cervix
3 chr1:176065600-176154800 Weak transcription Aorta Aorta
4 chr1:176069000-176139200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
5 chr1:176069200-176138800 Weak transcription HUVEC blood vessel
6 chr1:176070400-176151400 Weak transcription Pancreas Pancrea
7 chr1:176072000-176140600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
8 chr1:176085400-176142400 Weak transcription Lung lung
9 chr1:176095600-176130200 Weak transcription Primary T helper naive cells from peripheral blood blood
10 chr1:176096000-176138800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
11 chr1:176100800-176153200 Weak transcription Colonic Mucosa Colon
12 chr1:176102800-176130000 Weak transcription Sigmoid Colon Sigmoid Colon
13 chr1:176102800-176130600 Weak transcription Skeletal Muscle Female skeletal muscle
14 chr1:176110600-176164000 Weak transcription NHLF lung
15 chr1:176111800-176139400 Weak transcription Muscle Satellite Cultured Cells --
16 chr1:176116000-176146200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
17 chr1:176121200-176130800 Weak transcription HepG2 liver
18 chr1:176122000-176130200 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
19 chr1:176122000-176139800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
20 chr1:176123200-176130600 Weak transcription Thymus Thymus
21 chr1:176123800-176131200 Weak transcription K562 blood
22 chr1:176123800-176139800 Weak transcription Fetal Kidney kidney
23 chr1:176123800-176144200 Weak transcription Left Ventricle heart
24 chr1:176123800-176150000 Weak transcription Osteobl bone
25 chr1:176125200-176131000 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Female --
26 chr1:176126000-176130400 ZNF genes & repeats H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
27 chr1:176126000-176132000 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
28 chr1:176126400-176130000 Weak transcription Fetal Stomach stomach
29 chr1:176126400-176130200 ZNF genes & repeats GM12878-XiMat blood
30 chr1:176126400-176168800 Weak transcription Small Intestine intestine
31 chr1:176126800-176139800 Weak transcription HSMMtube muscle
32 chr1:176127000-176130000 Weak transcription Fetal Adrenal Gland Adrenal Gland
33 chr1:176127000-176147000 Weak transcription Primary T killer memory cells from peripheral blood blood
34 chr1:176127000-176174000 Weak transcription Colon Smooth Muscle Colon
35 chr1:176127200-176130600 Weak transcription Rectal Mucosa Donor 29 rectum
36 chr1:176127200-176137800 Weak transcription HSMM muscle
37 chr1:176127200-176153400 Weak transcription Brain Inferior Temporal Lobe brain
38 chr1:176127400-176139200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
39 chr1:176127400-176139600 Weak transcription Brain Anterior Caudate brain
40 chr1:176127400-176140200 Weak transcription Brain Hippocampus Middle brain
41 chr1:176127400-176141200 Weak transcription HMEC breast
42 chr1:176127400-176143200 Weak transcription Brain Substantia Nigra brain
43 chr1:176127400-176144200 Weak transcription A549 lung
44 chr1:176127400-176153400 Weak transcription Stomach Smooth Muscle stomach
45 chr1:176127400-176155400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
46 chr1:176127600-176130000 Strong transcription Primary T helper cells fromperipheralblood blood
47 chr1:176127600-176130000 Weak transcription Fetal Muscle Trunk muscle
48 chr1:176127600-176130400 Weak transcription Liver Liver
49 chr1:176127600-176132800 Strong transcription Primary T helper naive cells fromperipheralblood blood
50 chr1:176127600-176138200 Weak transcription Fetal Brain Male brain

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Last update: Aug 31, 2015