The 2.0 version of rSNPBase

Variant report

Variant rs55979360
Chromosome Location chr1:176045272-176045273
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:94 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:175976800-176046000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
2 chr1:175978200-176050600 Weak transcription Aorta Aorta
3 chr1:175978400-176069000 Weak transcription Primary T killer memory cells from peripheral blood blood
4 chr1:175979600-176045400 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
5 chr1:175994200-176065200 Weak transcription Psoas Muscle Psoas
6 chr1:176006200-176049000 Weak transcription HSMM muscle
7 chr1:176007800-176066400 Weak transcription Fetal Brain Male brain
8 chr1:176010200-176048000 Weak transcription Rectal Mucosa Donor 31 rectum
9 chr1:176010400-176066000 Weak transcription Muscle Satellite Cultured Cells --
10 chr1:176012400-176045400 Weak transcription Rectal Mucosa Donor 29 rectum
11 chr1:176012400-176045800 Weak transcription Brain Hippocampus Middle brain
12 chr1:176012400-176048200 Weak transcription Ovary ovary
13 chr1:176012400-176048200 Weak transcription Thymus Thymus
14 chr1:176012400-176062800 Weak transcription Lung lung
15 chr1:176012400-176065800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
16 chr1:176012800-176047000 Weak transcription Primary T helper naive cells fromperipheralblood blood
17 chr1:176028000-176045400 Strong transcription Monocytes-CD14+_RO01746 blood
18 chr1:176028200-176045400 Weak transcription HUES64 Cell Line embryonic stem cell
19 chr1:176028200-176048200 Weak transcription Skeletal Muscle Male skeletal muscle
20 chr1:176028200-176079200 Weak transcription HSMMtube muscle
21 chr1:176028400-176047200 Weak transcription A549 lung
22 chr1:176028400-176047800 Weak transcription Hela-S3 cervix
23 chr1:176028400-176049600 Weak transcription K562 blood
24 chr1:176028800-176047200 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
25 chr1:176029600-176048000 Weak transcription HepG2 liver
26 chr1:176030000-176047400 Weak transcription Primary T helper 17 cells PMA-I stimulated --
27 chr1:176030600-176045600 Weak transcription Primary hematopoietic stem cells blood
28 chr1:176030800-176048200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
29 chr1:176031000-176054000 Weak transcription NH-A brain
30 chr1:176032000-176048200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
31 chr1:176035000-176069800 Weak transcription NHEK skin
32 chr1:176035200-176067600 Weak transcription Colonic Mucosa Colon
33 chr1:176035400-176066400 Weak transcription Skeletal Muscle Female skeletal muscle
34 chr1:176035400-176067200 Weak transcription HUVEC blood vessel
35 chr1:176035600-176046800 Weak transcription Fetal Thymus thymus
36 chr1:176036000-176053800 Weak transcription Placenta Placenta
37 chr1:176036600-176049000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
38 chr1:176036800-176045800 Weak transcription Fetal Muscle Trunk muscle
39 chr1:176037000-176045600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
40 chr1:176037000-176048000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
41 chr1:176037200-176047600 Weak transcription Spleen Spleen
42 chr1:176037200-176048200 Weak transcription Left Ventricle heart
43 chr1:176037200-176064600 Weak transcription Gastric stomach
44 chr1:176037200-176067200 Weak transcription Small Intestine intestine
45 chr1:176037200-176067400 Weak transcription Osteobl bone
46 chr1:176038200-176045600 Weak transcription Stomach Mucosa stomach
47 chr1:176038200-176048200 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
48 chr1:176038600-176068800 Weak transcription Primary T helper naive cells from peripheral blood blood
49 chr1:176038800-176045800 Weak transcription Duodenum Mucosa Duodenum
50 chr1:176038800-176051800 Weak transcription Rectal Smooth Muscle rectum

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Last update: Aug 31, 2015