The 2.0 version of rSNPBase

Variant report

Variant rs58325269
Chromosome Location chr1:176114957-176114958
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:108 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:176054400-176131600 Weak transcription NH-A brain
2 chr1:176055000-176141600 Weak transcription Hela-S3 cervix
3 chr1:176065600-176154800 Weak transcription Aorta Aorta
4 chr1:176069000-176116400 Weak transcription Brain Cingulate Gyrus brain
5 chr1:176069000-176139200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
6 chr1:176069200-176123200 Weak transcription Osteobl bone
7 chr1:176069200-176126600 Weak transcription HMEC breast
8 chr1:176069200-176138800 Weak transcription HUVEC blood vessel
9 chr1:176069400-176121200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
10 chr1:176070400-176126400 Weak transcription Brain Anterior Caudate brain
11 chr1:176070400-176151400 Weak transcription Pancreas Pancrea
12 chr1:176071600-176117800 Weak transcription Gastric stomach
13 chr1:176072000-176140600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
14 chr1:176072800-176126600 Weak transcription iPS-18 Cell Line embryonic stem cell
15 chr1:176076200-176126000 Weak transcription Ovary ovary
16 chr1:176076200-176127800 Weak transcription Esophagus oesophagus
17 chr1:176083000-176126000 Weak transcription Primary T helper 17 cells PMA-I stimulated --
18 chr1:176085400-176142400 Weak transcription Lung lung
19 chr1:176085600-176116400 Weak transcription Adipose Nuclei Adipose
20 chr1:176085600-176122200 Weak transcription Left Ventricle heart
21 chr1:176085600-176122600 Weak transcription Thymus Thymus
22 chr1:176085600-176126000 Weak transcription Fetal Stomach stomach
23 chr1:176085600-176128600 Weak transcription Placenta Placenta
24 chr1:176087400-176122800 Weak transcription NHEK skin
25 chr1:176088600-176122800 Weak transcription Rectal Smooth Muscle rectum
26 chr1:176090800-176126600 Weak transcription Fetal Brain Male brain
27 chr1:176091600-176117000 Weak transcription Fetal Adrenal Gland Adrenal Gland
28 chr1:176093200-176119200 Weak transcription Breast Myoepithelial Primary Cells Breast
29 chr1:176093200-176121200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
30 chr1:176094800-176126200 Weak transcription Fetal Brain Female brain
31 chr1:176094800-176126400 Weak transcription Fetal Muscle Leg muscle
32 chr1:176095600-176130200 Weak transcription Primary T helper naive cells from peripheral blood blood
33 chr1:176096000-176115400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
34 chr1:176096000-176138800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
35 chr1:176100400-176126400 Weak transcription Stomach Smooth Muscle stomach
36 chr1:176100800-176153200 Weak transcription Colonic Mucosa Colon
37 chr1:176101400-176126600 Weak transcription Brain Substantia Nigra brain
38 chr1:176102800-176115000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
39 chr1:176102800-176116800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
40 chr1:176102800-176121000 Weak transcription Rectal Mucosa Donor 31 rectum
41 chr1:176102800-176121800 Weak transcription Duodenum Smooth Muscle Duodenum
42 chr1:176102800-176126400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
43 chr1:176102800-176130000 Weak transcription Sigmoid Colon Sigmoid Colon
44 chr1:176102800-176130600 Weak transcription Skeletal Muscle Female skeletal muscle
45 chr1:176103000-176116600 Weak transcription Primary hematopoietic stem cells short term culture blood
46 chr1:176103000-176121000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
47 chr1:176103000-176125800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
48 chr1:176103200-176115200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
49 chr1:176103200-176126600 Weak transcription HSMMtube muscle
50 chr1:176103400-176123400 Weak transcription K562 blood

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Last update: Aug 31, 2015