The 2.0 version of rSNPBase

Variant report

Variant rs6425370
Chromosome Location chr1:175960475-175960476
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:78 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:175906400-175962600 Weak transcription NH-A brain
2 chr1:175946000-175996000 Weak transcription HMEC breast
3 chr1:175948200-175961400 Weak transcription NHLF lung
4 chr1:175950000-175961200 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
5 chr1:175953600-175960800 Strong transcription Primary T helper cells fromperipheralblood blood
6 chr1:175953800-175961000 Strong transcription Monocytes-CD14+_RO01746 blood
7 chr1:175953800-175962000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
8 chr1:175953800-175999600 Weak transcription Colonic Mucosa Colon
9 chr1:175954000-175961000 Weak transcription Esophagus oesophagus
10 chr1:175954000-175962000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
11 chr1:175954000-175962000 Weak transcription H9 Cell Line embryonic stem cell
12 chr1:175954000-175963600 Weak transcription Lung lung
13 chr1:175954000-175977800 Weak transcription Sigmoid Colon Sigmoid Colon
14 chr1:175954000-175978000 Weak transcription Left Ventricle heart
15 chr1:175954000-175987800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
16 chr1:175954200-175960600 Weak transcription Colon Smooth Muscle Colon
17 chr1:175954200-175961600 Weak transcription Brain Hippocampus Middle brain
18 chr1:175954200-175962000 Weak transcription Brain Inferior Temporal Lobe brain
19 chr1:175954600-175964600 Weak transcription Muscle Satellite Cultured Cells --
20 chr1:175954800-175961000 Strong transcription Primary B cells from cord blood blood
21 chr1:175954800-175961000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
22 chr1:175954800-175961800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
23 chr1:175954800-175962200 Weak transcription iPS-18 Cell Line embryonic stem cell
24 chr1:175954800-175963000 Weak transcription Brain Anterior Caudate brain
25 chr1:175954800-175968600 Weak transcription Fetal Muscle Leg muscle
26 chr1:175955000-175960600 Weak transcription Fetal Adrenal Gland Adrenal Gland
27 chr1:175955000-175962000 Weak transcription Fetal Intestine Small intestine
28 chr1:175955000-175962200 Weak transcription iPS-20b Cell Line embryonic stem cell
29 chr1:175955000-175963800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
30 chr1:175955400-175961600 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
31 chr1:175956000-175963000 Weak transcription Skeletal Muscle Female skeletal muscle
32 chr1:175956000-175963400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
33 chr1:175956200-175961200 Weak transcription Primary T killer naive cells fromperipheralblood blood
34 chr1:175956200-175963600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
35 chr1:175956600-175961800 Weak transcription GM12878-XiMat blood
36 chr1:175957000-175981200 Weak transcription Primary T helper naive cells fromperipheralblood blood
37 chr1:175957400-175962800 Weak transcription NHDF-Ad bronchial
38 chr1:175957600-175960800 Weak transcription HUES64 Cell Line embryonic stem cell
39 chr1:175957600-175977400 Weak transcription Cortex derived primary cultured neurospheres brain
40 chr1:175957600-175977400 Weak transcription HSMM muscle
41 chr1:175957800-175962200 Weak transcription Stomach Smooth Muscle stomach
42 chr1:175957800-175971200 Weak transcription Primary T helper 17 cells PMA-I stimulated --
43 chr1:175957800-176022000 Weak transcription Primary T helper naive cells from peripheral blood blood
44 chr1:175958000-175961600 Weak transcription Primary hematopoietic stem cells short term culture blood
45 chr1:175958000-175962000 Weak transcription Duodenum Mucosa Duodenum
46 chr1:175958000-175962600 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
47 chr1:175958000-175964000 Weak transcription Primary T cells from cord blood blood
48 chr1:175958000-175965000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
49 chr1:175958000-175977200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
50 chr1:175958000-175977200 Weak transcription Rectal Mucosa Donor 31 rectum

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Last update: Aug 31, 2015