Variant report

Variant	rs74127150
Chromosome Location	chr1:175924944-175924945
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:175923519..175925834-chr1:175928249..175930995,3	K562	blood:
2	chr1:175924840..175926748-chr1:175927061..175928619,2	MCF-7	breast:
3	chr1:175923519..175925469-chr1:175929072..175930995,2	K562	blood:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10436864	0.88[EUR][1000 genomes]
rs10798427	0.86[EUR][1000 genomes]
rs10798428	0.86[EUR][1000 genomes]
rs11576862	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11580753	1.00[ASN][1000 genomes]
rs11583071	1.00[ASN][1000 genomes]
rs11584481	1.00[ASN][1000 genomes]
rs11588480	1.00[ASN][1000 genomes]
rs11590045	1.00[ASN][1000 genomes]
rs12038027	0.84[EUR][1000 genomes]
rs12403794	0.81[AMR][1000 genomes]
rs12404181	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1357337	0.88[EUR][1000 genomes]
rs17351808	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17351933	0.81[AMR][1000 genomes]
rs2861630	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4307526	0.84[EUR][1000 genomes]
rs4314844	0.84[EUR][1000 genomes]
rs4460596	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4601543	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56051510	1.00[ASN][1000 genomes]
rs56198111	1.00[ASN][1000 genomes]
rs56949697	1.00[ASN][1000 genomes]
rs60719126	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60964243	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61186664	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61820953	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61820960	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61820965	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61820968	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61820999	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61821007	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61821009	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61821028	0.81[AMR][1000 genomes]
rs61822767	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6425368	0.86[EUR][1000 genomes]
rs6680309	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6693947	0.95[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6704509	0.84[EUR][1000 genomes]
rs74127154	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7517351	0.91[EUR][1000 genomes]
rs7524972	0.84[EUR][1000 genomes]
rs7537435	0.91[EUR][1000 genomes]
rs7545043	0.85[EUR][1000 genomes]
rs7545639	0.84[EUR][1000 genomes]
rs7552181	0.91[EUR][1000 genomes]
rs7554913	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9783047	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1823794	chr1:175869554-176311778	Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:175874400-175945600	Weak transcription	A549	lung
2	chr1:175880000-175937800	Weak transcription	HSMMtube	muscle
3	chr1:175886400-175929400	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr1:175887800-175929800	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr1:175889200-175937800	Weak transcription	Osteobl	bone
6	chr1:175892400-175940600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr1:175893200-175943000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr1:175897000-175953000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr1:175897600-175953200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr1:175897800-175952400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr1:175898600-175953200	Weak transcription	Pancreas	Pancrea
12	chr1:175899200-175953200	Weak transcription	Esophagus	oesophagus
13	chr1:175901600-175940600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr1:175901800-175925800	Weak transcription	HUVEC	blood vessel
15	chr1:175902800-175931800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr1:175903400-175951400	Weak transcription	K562	blood
17	chr1:175903600-175940800	Weak transcription	HMEC	breast
18	chr1:175904200-175956200	Weak transcription	Psoas Muscle	Psoas
19	chr1:175904600-175953000	Weak transcription	Right Ventricle	heart
20	chr1:175905000-175946800	Strong transcription	Monocytes-CD14+_RO01746	blood
21	chr1:175906000-175930000	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr1:175906400-175940600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr1:175906400-175944800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr1:175906400-175952400	Weak transcription	Spleen	Spleen
25	chr1:175906400-175962600	Weak transcription	NH-A	brain
26	chr1:175906800-175952000	Weak transcription	Stomach Smooth Muscle	stomach
27	chr1:175907400-175950600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
28	chr1:175907800-175937400	Weak transcription	NHLF	lung
29	chr1:175907800-175940600	Weak transcription	Colonic Mucosa	Colon
30	chr1:175907800-175945400	Weak transcription	Small Intestine	intestine
31	chr1:175907800-175945600	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr1:175908000-175959400	Weak transcription	NHEK	skin
33	chr1:175908200-175939400	Weak transcription	Brain Cingulate Gyrus	brain
34	chr1:175909400-175948000	Weak transcription	Colon Smooth Muscle	Colon
35	chr1:175909600-175932200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
36	chr1:175909600-175942800	Weak transcription	Fetal Brain Female	brain
37	chr1:175911200-175947600	Weak transcription	Brain Hippocampus Middle	brain
38	chr1:175911200-175950400	Weak transcription	Fetal Heart	heart
39	chr1:175913600-175929800	Weak transcription	Left Ventricle	heart
40	chr1:175916000-175940600	Weak transcription	Hela-S3	cervix
41	chr1:175916200-175929600	Weak transcription	Fetal Thymus	thymus
42	chr1:175916200-175929800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr1:175916200-175937400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr1:175916200-175939800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr1:175916400-175926800	Weak transcription	HUES48 Cell Line	embryonic stem cell
46	chr1:175916400-175928800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr1:175916400-175929400	Weak transcription	Rectal Mucosa Donor 31	rectum
48	chr1:175916400-175929600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr1:175916400-175929600	Weak transcription	Fetal Kidney	kidney
50	chr1:175916400-175929800	Weak transcription	Placenta	Placenta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links