Variant report

Variant	rs10808526
Chromosome Location	chr8:124571821-124571822
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs13256806	0.82[CHB][hapmap];0.93[CHD][hapmap];0.88[JPT][hapmap];0.85[ASN][1000 genomes]
rs4870856	0.85[ASN][1000 genomes]
rs4871387	0.82[CEU][hapmap]
rs4871389	0.82[CEU][hapmap];0.86[MEX][hapmap]
rs7816943	0.82[CHB][hapmap];0.88[JPT][hapmap];0.85[ASN][1000 genomes]
rs7840558	0.85[ASN][1000 genomes]
rs9642867	0.82[CHB][hapmap];0.93[CHD][hapmap];0.88[JPT][hapmap];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831450	chr8:124471741-124661359	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:124571000-124575400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:124571400-124572800	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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