Variant report

Variant	rs7816943
Chromosome Location	chr8:124580660-124580661
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10092188	0.93[EUR][1000 genomes]
rs10808526	0.85[ASN][1000 genomes]
rs11780880	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs12541523	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13256806	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13262816	0.93[EUR][1000 genomes]
rs13267913	0.86[CHB][hapmap];0.80[ASN][1000 genomes]
rs2385447	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4006406	0.93[EUR][1000 genomes]
rs41319847	0.86[ASN][1000 genomes]
rs4382457	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs4389916	0.93[EUR][1000 genomes]
rs4870856	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57762054	0.83[ASN][1000 genomes]
rs6470157	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs7010236	0.88[EUR][1000 genomes]
rs7840558	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7843874	1.00[CEU][hapmap];0.93[CHB][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9642867	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831450	chr8:124471741-124661359	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:124575600-124598600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:124578000-124580800	Weak transcription	Fetal Heart	heart
3	chr8:124578800-124582800	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr8:124580600-124581400	Enhancers	Placenta	Placenta
5	chr8:124580600-124581400	Enhancers	Right Atrium	heart
6	chr8:124580600-124581600	Enhancers	Fetal Kidney	kidney
7	chr8:124580600-124582000	Enhancers	Fetal Muscle Leg	muscle
8	chr8:124580600-124582400	Enhancers	Psoas Muscle	Psoas

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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