Variant report

Variant	rs11780880
Chromosome Location	chr8:124599176-124599177
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10092188	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12541523	0.88[EUR][1000 genomes]
rs13256806	1.00[CEU][hapmap];0.86[GIH][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes]
rs13260517	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs13262816	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13265242	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4006406	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4382457	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4389916	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4870856	0.95[EUR][1000 genomes]
rs6470157	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7010236	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7816943	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs7840558	0.88[EUR][1000 genomes]
rs7843874	1.00[CEU][hapmap];0.92[GIH][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes]
rs9642867	1.00[CEU][hapmap];0.86[GIH][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831450	chr8:124471741-124661359	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:124597400-124599800	Weak transcription	Fetal Heart	heart
2	chr8:124597800-124599400	Enhancers	Osteobl	bone
3	chr8:124598000-124599400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr8:124598000-124599400	Enhancers	NH-A	brain
5	chr8:124598200-124599400	Enhancers	HMEC	breast
6	chr8:124598400-124599400	Enhancers	HSMM	muscle
7	chr8:124598400-124602200	Weak transcription	Fetal Muscle Leg	muscle
8	chr8:124598600-124599200	Enhancers	HSMMtube	muscle
9	chr8:124598600-124599200	Enhancers	NHDF-Ad	bronchial
10	chr8:124598600-124599400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr8:124598600-124601400	Enhancers	Aorta	Aorta
12	chr8:124598800-124599200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr8:124598800-124601400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr8:124599000-124602000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links