Variant report

Variant	rs4006406
Chromosome Location	chr8:124590968-124590969
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10092188	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11780880	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12541523	0.88[EUR][1000 genomes]
rs13256806	0.88[EUR][1000 genomes]
rs13260517	0.92[ASN][1000 genomes]
rs13262816	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13265242	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4382457	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4389916	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4870856	0.95[EUR][1000 genomes]
rs6470157	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7010236	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7816943	0.93[EUR][1000 genomes]
rs7840558	0.88[EUR][1000 genomes]
rs7843874	0.95[EUR][1000 genomes]
rs9642867	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831450	chr8:124471741-124661359	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:124575600-124598600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:124587400-124592000	Weak transcription	HSMM	muscle
3	chr8:124587400-124592200	Weak transcription	Placenta	Placenta
4	chr8:124587800-124591600	Weak transcription	Fetal Heart	heart
5	chr8:124588000-124591600	Weak transcription	Psoas Muscle	Psoas
6	chr8:124588400-124591000	Weak transcription	Fetal Muscle Leg	muscle
7	chr8:124588400-124591600	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr8:124588400-124592800	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr8:124588800-124592200	Weak transcription	Duodenum Mucosa	Duodenum
10	chr8:124589600-124593600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr8:124590000-124591000	Weak transcription	Fetal Intestine Small	intestine
12	chr8:124590000-124592400	Weak transcription	Fetal Intestine Large	intestine
13	chr8:124590200-124591800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr8:124590800-124591600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr8:124590800-124591600	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr8:124590800-124592000	Weak transcription	HMEC	breast
17	chr8:124590800-124593000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr8:124590800-124597000	Weak transcription	HSMMtube	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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