Variant report

Variant	rs7843874
Chromosome Location	chr8:124585492-124585493
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10092188	0.95[EUR][1000 genomes]
rs11780880	1.00[CEU][hapmap];0.92[GIH][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes]
rs12541523	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13256806	1.00[CEU][hapmap];0.93[CHB][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13262816	0.95[EUR][1000 genomes]
rs13267913	0.93[CHB][hapmap];0.96[CHD][hapmap];0.92[JPT][hapmap];0.96[ASN][1000 genomes]
rs2385447	0.84[EUR][1000 genomes]
rs4006406	0.95[EUR][1000 genomes]
rs4382457	1.00[CEU][hapmap];0.92[GIH][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes]
rs4389916	0.95[EUR][1000 genomes]
rs4870856	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs57762054	1.00[ASN][1000 genomes]
rs6470157	1.00[CEU][hapmap];0.92[GIH][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes]
rs7010236	0.90[EUR][1000 genomes]
rs7816943	1.00[CEU][hapmap];0.93[CHB][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7840558	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9642867	1.00[CEU][hapmap];0.93[CHB][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831450	chr8:124471741-124661359	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:124575600-124598600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:124581600-124586400	Weak transcription	Fetal Heart	heart
3	chr8:124582400-124585800	Weak transcription	Stomach Smooth Muscle	stomach
4	chr8:124582600-124588400	Enhancers	Fetal Muscle Leg	muscle
5	chr8:124582600-124588400	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr8:124583200-124588000	Enhancers	Psoas Muscle	Psoas
7	chr8:124583400-124586400	Weak transcription	HSMMtube	muscle
8	chr8:124584600-124587400	Enhancers	Placenta	Placenta
9	chr8:124584800-124585600	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr8:124584800-124585800	Enhancers	Esophagus	oesophagus
11	chr8:124584800-124586800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr8:124585000-124587400	Enhancers	Adipose Nuclei	Adipose
13	chr8:124585200-124585800	Enhancers	Fetal Intestine Large	intestine
14	chr8:124585200-124590000	Enhancers	Skeletal Muscle Male	skeletal muscle
15	chr8:124585400-124585800	Enhancers	Hela-S3	cervix
16	chr8:124585400-124587000	Weak transcription	Fetal Intestine Small	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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