Variant report

Variant	rs4870856
Chromosome Location	chr8:124584021-124584022
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10092188	0.95[EUR][1000 genomes]
rs10808526	0.85[ASN][1000 genomes]
rs11780880	0.95[EUR][1000 genomes]
rs12541523	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13256806	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13262816	0.95[EUR][1000 genomes]
rs13267913	0.80[ASN][1000 genomes]
rs2385447	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4006406	0.95[EUR][1000 genomes]
rs41319847	0.86[ASN][1000 genomes]
rs4382457	0.95[EUR][1000 genomes]
rs4389916	0.95[EUR][1000 genomes]
rs57762054	0.83[ASN][1000 genomes]
rs6470157	0.95[EUR][1000 genomes]
rs7010236	0.90[EUR][1000 genomes]
rs7816943	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7840558	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7843874	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9642867	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831450	chr8:124471741-124661359	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:124575600-124598600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:124581400-124584600	Weak transcription	Placenta	Placenta
3	chr8:124581400-124584800	Weak transcription	Esophagus	oesophagus
4	chr8:124581400-124585000	Weak transcription	Adipose Nuclei	Adipose
5	chr8:124581600-124586400	Weak transcription	Fetal Heart	heart
6	chr8:124582400-124585800	Weak transcription	Stomach Smooth Muscle	stomach
7	chr8:124582600-124588400	Enhancers	Fetal Muscle Leg	muscle
8	chr8:124582600-124588400	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr8:124582800-124584800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr8:124583200-124584200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
11	chr8:124583200-124588000	Enhancers	Psoas Muscle	Psoas
12	chr8:124583400-124586400	Weak transcription	HSMMtube	muscle
13	chr8:124583800-124584400	Enhancers	Right Atrium	heart
14	chr8:124584000-124584200	Enhancers	Left Ventricle	heart
15	chr8:124584000-124584200	Enhancers	Right Ventricle	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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