Variant report

Variant	rs10821279
Chromosome Location	chr9:96741641-96741642
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:128045416..128048179-chr9:96740380..96742929,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000106348	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1057715	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10821275	0.94[EUR][1000 genomes]
rs10821287	1.00[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs10821288	1.00[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs10992998	0.92[EUR][1000 genomes]
rs10992999	0.92[EUR][1000 genomes]
rs10993002	0.85[CEU][hapmap];0.92[EUR][1000 genomes]
rs10993004	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10993005	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10993006	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10993007	0.94[EUR][1000 genomes]
rs10993012	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10993013	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10993015	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10993016	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10993019	1.00[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs10993029	0.93[ASN][1000 genomes]
rs10993031	1.00[AFR][1000 genomes]
rs10993045	1.00[AFR][1000 genomes]
rs10993046	1.00[AFR][1000 genomes]
rs10993059	0.80[CEU][hapmap]
rs12156437	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12375599	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1316935	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16909605	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16909652	1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs1933683	0.89[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4269597	0.92[EUR][1000 genomes]
rs4330748	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57693373	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59397123	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73519466	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893589	chr9:96624645-96884544	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96737800-96742000	Strong transcription	Stomach Smooth Muscle	stomach
2	chr9:96738000-96742400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr9:96738400-96748600	Weak transcription	Gastric	stomach
4	chr9:96740200-96742600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
5	chr9:96741200-96742200	Genic enhancers	Fetal Stomach	stomach
6	chr9:96741200-96742400	Bivalent Enhancer	Fetal Muscle Leg	muscle
7	chr9:96741200-96742600	Weak transcription	HMEC	breast
8	chr9:96741600-96741800	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr9:96741600-96743000	Enhancers	Fetal Intestine Large	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links