Variant report

Variant	rs12156437
Chromosome Location	chr9:96722890-96722891
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:96712713..96719267-chr9:96721537..96727951,10	MCF-7	breast:
2	chr9:96722430..96724465-chr9:96726832..96729189,2	K562	blood:
3	chr9:96445904..96447979-chr9:96722570..96724839,2	MCF-7	breast:
4	chr9:96720222..96721910-chr9:96722308..96724040,2	MCF-7	breast:
5	chr9:96621656..96622249-chr9:96722539..96723082,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000235601	Chromatin interaction
ENSG00000131668	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1057715	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10821275	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10821279	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10821287	0.82[ASN][1000 genomes]
rs10821288	0.82[ASN][1000 genomes]
rs10992998	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10992999	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10993002	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10993004	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10993005	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10993006	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10993007	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10993012	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10993013	0.96[EUR][1000 genomes]
rs10993015	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10993016	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10993019	0.91[ASN][1000 genomes]
rs10993029	0.91[ASN][1000 genomes]
rs12375599	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1316935	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16909605	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16909652	0.82[CEU][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1933683	0.82[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4269597	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4330748	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57693373	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59397123	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72755516	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72755517	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73519466	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893589	chr9:96624645-96884544	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv824993	chr9:96699362-96725105	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv893590	chr9:96701287-96729129	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96720400-96723200	Bivalent Enhancer	Placenta	Placenta
2	chr9:96720400-96724400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
3	chr9:96720600-96723200	Bivalent Enhancer	Fetal Intestine Large	intestine
4	chr9:96720600-96723400	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
5	chr9:96720600-96723600	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 2	blood
6	chr9:96720800-96723200	Bivalent Enhancer	Spleen	Spleen
7	chr9:96721200-96723000	Enhancers	Pancreas	Pancrea
8	chr9:96721200-96723200	Bivalent Enhancer	Liver	Liver
9	chr9:96721200-96723600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
10	chr9:96721200-96723600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
11	chr9:96721200-96724200	Bivalent Enhancer	Stomach Mucosa	stomach
12	chr9:96721400-96723200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
13	chr9:96721400-96723600	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
14	chr9:96721400-96723600	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
15	chr9:96721400-96723600	Bivalent Enhancer	Fetal Muscle Leg	muscle
16	chr9:96721600-96723000	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
17	chr9:96721600-96723200	Bivalent Enhancer	Primary hematopoietic stem cells	blood
18	chr9:96721600-96723200	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr9:96721600-96723200	Bivalent Enhancer	Colon Smooth Muscle	Colon
20	chr9:96721600-96723400	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
21	chr9:96721600-96723600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr9:96721600-96723600	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
23	chr9:96721800-96723000	Bivalent Enhancer	Primary T cells from cord blood	blood
24	chr9:96721800-96723000	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr9:96722000-96723200	Bivalent Enhancer	Fetal Thymus	thymus
26	chr9:96722000-96723600	Bivalent Enhancer	Primary B cells from peripheral blood	blood
27	chr9:96722000-96723600	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
28	chr9:96722000-96723800	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
29	chr9:96722000-96724000	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
30	chr9:96722200-96723400	Bivalent Enhancer	Primary B cells from cord blood	blood
31	chr9:96722400-96723000	Bivalent Enhancer	HUVEC	blood vessel
32	chr9:96722400-96723200	Bivalent Enhancer	Brain Hippocampus Middle	brain
33	chr9:96722600-96723000	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr9:96722600-96723000	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr9:96722600-96723000	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
36	chr9:96722600-96723000	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood
37	chr9:96722600-96723000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr9:96722600-96723000	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr9:96722600-96723000	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
40	chr9:96722600-96723000	Bivalent Enhancer	Brain Inferior Temporal Lobe	brain
41	chr9:96722600-96723000	Bivalent Enhancer	Brain Substantia Nigra	brain
42	chr9:96722600-96723000	Bivalent Enhancer	Duodenum Mucosa	Duodenum
43	chr9:96722600-96723000	Bivalent Enhancer	Esophagus	oesophagus
44	chr9:96722600-96723000	Enhancers	Gastric	stomach
45	chr9:96722600-96723000	Bivalent Enhancer	Left Ventricle	heart
46	chr9:96722600-96723000	Flanking Bivalent TSS/Enh	Right Ventricle	heart
47	chr9:96722600-96723000	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
48	chr9:96722600-96723200	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
49	chr9:96722600-96723200	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr9:96722600-96723200	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin

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