Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10821279	1.00[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs10821288	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10993004	0.82[ASN][1000 genomes]
rs10993005	0.82[ASN][1000 genomes]
rs10993006	0.82[ASN][1000 genomes]
rs10993012	1.00[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs10993013	1.00[AFR][1000 genomes]
rs10993015	1.00[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs10993016	1.00[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs10993019	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10993029	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10993031	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10993045	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10993046	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12156437	0.82[ASN][1000 genomes]
rs12375599	1.00[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs1316935	0.82[ASN][1000 genomes]
rs16909605	0.82[ASN][1000 genomes]
rs16909652	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4330748	1.00[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs4609253	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57693373	0.82[ASN][1000 genomes]
rs73519466	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893589	chr9:96624645-96884544	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv482457	chr9:96813852-96996170	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	217 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96794200-96828000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr9:96795400-96823800	Weak transcription	Left Ventricle	heart
3	chr9:96798200-96822400	Weak transcription	Fetal Lung	lung
4	chr9:96800000-96818600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr9:96813600-96820200	Weak transcription	Fetal Stomach	stomach
6	chr9:96813600-96823400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr9:96814200-96816800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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