Variant report

Variant	rs57693373
Chromosome Location	chr9:96726230-96726231
allele	-/TTA
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:96656015..96657684-chr9:96723768..96726547,2	MCF-7	breast:
2	chr9:96712713..96719267-chr9:96721537..96727951,10	MCF-7	breast:
3	chr9:96674702..96676543-chr9:96724873..96726532,2	K562	blood:
4	chr9:96724820..96727040-chr9:96730080..96732897,2	K562	blood:
5	chr9:96718522..96721455-chr9:96725392..96727968,2	MCF-7	breast:
6	chr9:96671241..96673198-chr9:96724070..96726611,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000131668	Chromatin interaction
ENSG00000235601	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1057715	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10821275	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10821279	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10821287	0.82[ASN][1000 genomes]
rs10821288	0.82[ASN][1000 genomes]
rs10992998	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10992999	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10993002	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10993004	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10993005	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10993006	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10993007	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10993012	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10993013	0.96[EUR][1000 genomes]
rs10993015	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10993016	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10993019	0.91[ASN][1000 genomes]
rs10993029	0.91[ASN][1000 genomes]
rs12156437	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12375599	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1316935	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16909605	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16909652	0.91[ASN][1000 genomes]
rs1933683	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4269597	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4330748	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59397123	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72755516	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72755517	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73519466	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893589	chr9:96624645-96884544	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv893590	chr9:96701287-96729129	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96723000-96728800	Weak transcription	Pancreas	Pancrea
2	chr9:96723000-96729800	Weak transcription	Gastric	stomach
3	chr9:96724800-96726400	Enhancers	Placenta	Placenta
4	chr9:96725000-96726600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
5	chr9:96725000-96726800	Bivalent Enhancer	Fetal Muscle Leg	muscle
6	chr9:96725000-96727400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr9:96725400-96730800	Weak transcription	Stomach Mucosa	stomach
8	chr9:96725800-96726600	Enhancers	Stomach Smooth Muscle	stomach
9	chr9:96726000-96726400	Strong transcription	Fetal Stomach	stomach
10	chr9:96726200-96726400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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