Variant report

Variant	rs16909652
Chromosome Location	chr9:96780588-96780589
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:96780349..96783883-chr9:96791469..96794571,5	MCF-7	breast:
2	chr9:96772712..96774231-chr9:96780568..96782311,2	MCF-7	breast:
3	chr9:96778715..96781374-chr9:96789019..96791768,2	K562	blood:

Variant related genes	Relation type
ENSG00000158079	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10821279	1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs10821287	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10821288	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10993002	1.00[CEU][hapmap]
rs10993004	0.91[ASN][1000 genomes]
rs10993005	0.91[ASN][1000 genomes]
rs10993006	0.91[ASN][1000 genomes]
rs10993012	1.00[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs10993013	1.00[AFR][1000 genomes]
rs10993015	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10993016	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10993019	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10993029	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10993031	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10993045	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10993046	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12156437	0.82[CEU][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs12375599	1.00[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs1316935	0.91[ASN][1000 genomes]
rs16909605	0.82[CEU][hapmap];0.91[ASN][1000 genomes]
rs1933683	0.85[JPT][hapmap];0.87[ASN][1000 genomes]
rs4330748	1.00[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs4609253	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs57693373	0.91[ASN][1000 genomes]
rs59397123	0.89[ASN][1000 genomes]
rs73519466	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893589	chr9:96624645-96884544	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96773800-96781800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr9:96779400-96780600	Weak transcription	Fetal Brain Female	brain
3	chr9:96779400-96782200	Enhancers	Fetal Stomach	stomach
4	chr9:96779800-96781000	Enhancers	Fetal Brain Male	brain
5	chr9:96780000-96781200	Enhancers	Duodenum Smooth Muscle	Duodenum
6	chr9:96780000-96782200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr9:96780000-96782200	Enhancers	Fetal Lung	lung
8	chr9:96780000-96782400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr9:96780200-96780600	Enhancers	Ovary	ovary
10	chr9:96780200-96780800	Flanking Active TSS	Stomach Smooth Muscle	stomach
11	chr9:96780200-96781000	Enhancers	Fetal Kidney	kidney
12	chr9:96780200-96781000	Enhancers	Fetal Muscle Leg	muscle
13	chr9:96780200-96781200	Enhancers	Colon Smooth Muscle	Colon
14	chr9:96780200-96781400	Enhancers	GM12878-XiMat	blood
15	chr9:96780200-96782200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr9:96780200-96782200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr9:96780200-96782200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr9:96780400-96780800	Enhancers	Rectal Smooth Muscle	rectum
19	chr9:96780400-96780800	Enhancers	HSMMtube	muscle
20	chr9:96780400-96781000	Flanking Active TSS	Osteobl	bone
21	chr9:96780400-96781200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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