Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:25853863..25855437-chr10:25858792..25860458,2	K562	blood:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10764560	0.87[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs10828821	0.95[CHB][hapmap];0.91[JPT][hapmap];0.91[ASN][1000 genomes]
rs10828822	0.88[ASW][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]
rs10828823	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10828825	1.00[CHB][hapmap];0.95[JPT][hapmap];0.99[ASN][1000 genomes]
rs10828827	1.00[CEU][hapmap];0.82[CHB][hapmap]
rs11014598	0.85[CHB][hapmap];0.83[JPT][hapmap];0.88[ASN][1000 genomes]
rs11014600	0.95[CHB][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs11014601	0.95[CHB][hapmap];0.85[JPT][hapmap];0.88[ASN][1000 genomes]
rs11014603	0.95[CHB][hapmap];0.82[CHD][hapmap];0.85[ASN][1000 genomes]
rs11014605	0.95[CHB][hapmap];0.95[JPT][hapmap];0.98[ASN][1000 genomes]
rs11014608	1.00[CHB][hapmap];0.95[JPT][hapmap];0.99[ASN][1000 genomes]
rs11014609	0.99[ASN][1000 genomes]
rs11014631	0.84[CHD][hapmap]
rs12573482	0.88[ASN][1000 genomes]
rs1414053	0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs1932148	0.81[JPT][hapmap]
rs34945936	0.99[ASN][1000 genomes]
rs7914813	0.84[CHD][hapmap]
rs7914821	0.84[CHD][hapmap]
rs976361	0.83[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349863	chr10:25614571-25946379	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv550227	chr10:25843019-25865744	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv894972	chr10:25849998-25917909	Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25847200-25861200	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr10:25851000-25854400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr10:25851200-25854400	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr10:25851200-25854400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr10:25853400-25855400	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr10:25853600-25854400	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr10:25853800-25854800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr10:25854000-25854400	Enhancers	Fetal Stomach	stomach

Quick Search: