Variant report

Variant	rs11014603
Chromosome Location	chr10:25839112-25839113
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10764560	1.00[CEU][hapmap];0.83[CHB][hapmap];0.81[JPT][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10828821	1.00[CEU][hapmap];0.91[CHB][hapmap];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10828822	1.00[CEU][hapmap];0.95[CHB][hapmap];0.84[CHD][hapmap];1.00[GIH][hapmap];0.81[JPT][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10828823	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10828825	1.00[CEU][hapmap];0.95[CHB][hapmap];0.81[JPT][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10828828	0.95[CHB][hapmap];0.82[CHD][hapmap];0.85[ASN][1000 genomes]
rs11014598	1.00[CEU][hapmap];0.81[CHB][hapmap];0.82[YRI][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11014600	1.00[CEU][hapmap];0.91[CHB][hapmap];0.82[JPT][hapmap];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11014601	1.00[CEU][hapmap];0.91[CHB][hapmap];0.82[JPT][hapmap];0.82[YRI][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11014605	1.00[CEU][hapmap];0.91[CHB][hapmap];0.81[JPT][hapmap];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11014608	1.00[CEU][hapmap];0.95[CHB][hapmap];0.81[JPT][hapmap];0.82[YRI][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11014609	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12573482	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1414053	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34945936	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349863	chr10:25614571-25946379	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25834600-25839200	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr10:25836600-25841200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr10:25836800-25844800	Weak transcription	NH-A	brain
4	chr10:25837400-25839200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr10:25838200-25840800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr10:25838800-25839400	Enhancers	Fetal Stomach	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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