Variant report
| Variant | rs1414053 |
|---|---|
| Chromosome Location | chr10:25848220-25848221 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr10:25843047..25844904-chr10:25848062..25851001,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:16)
| rs_ID | r2[population] |
|---|---|
| rs10764560 | 1.00[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs10828821 | 1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.90[YRI][hapmap];0.82[AFR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs10828822 | 1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.89[YRI][hapmap];0.82[AFR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs10828823 | 1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs10828825 | 1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs10828828 | 0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes] |
| rs11014598 | 1.00[CEU][hapmap];0.81[CHB][hapmap];0.84[JPT][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs11014600 | 1.00[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs11014601 | 1.00[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs11014603 | 1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs11014605 | 1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs11014608 | 1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs11014609 | 1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs12573482 | 0.92[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs1932148 | 0.80[JPT][hapmap] |
| rs34945936 | 1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3349863 | chr10:25614571-25946379 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv550227 | chr10:25843019-25865744 | Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:25847200-25861200 | Weak transcription | Cortex derived primary cultured neurospheres | brain |
