Variant report

Variant	rs34945936
Chromosome Location	chr10:25855484-25855485
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10764560	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10828821	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10828822	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10828823	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10828825	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10828828	0.99[ASN][1000 genomes]
rs11014598	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11014600	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11014601	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11014603	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11014605	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11014608	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014609	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12573482	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1414053	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349863	chr10:25614571-25946379	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv550227	chr10:25843019-25865744	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv894972	chr10:25849998-25917909	Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25847200-25861200	Weak transcription	Cortex derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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