Variant report

Variant	rs10828822
Chromosome Location	chr10:25843033-25843034
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:25833305..25835524-chr10:25841251..25843498,2	K562	blood:
2	chr10:25835478..25839771-chr10:25841392..25844555,4	K562	blood:
3	chr10:25836858..25839438-chr10:25841392..25844973,3	K562	blood:
4	chr10:25833305..25835212-chr10:25841456..25843498,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10764560	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10828815	0.81[JPT][hapmap]
rs10828821	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10828823	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10828825	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10828827	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs10828828	0.88[ASW][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]
rs11014598	1.00[CEU][hapmap];0.85[CHB][hapmap];0.89[JPT][hapmap];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11014600	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11014601	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11014603	1.00[CEU][hapmap];0.95[CHB][hapmap];0.84[CHD][hapmap];1.00[GIH][hapmap];0.81[JPT][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11014605	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11014608	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11014609	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12573482	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1414053	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.89[YRI][hapmap];0.82[AFR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1887925	0.81[JPT][hapmap]
rs1932148	0.85[JPT][hapmap]
rs1932149	0.81[JPT][hapmap]
rs1932150	0.81[JPT][hapmap]
rs34945936	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4459183	0.81[JPT][hapmap]
rs4623781	0.81[JPT][hapmap]
rs4749043	0.81[JPT][hapmap]
rs976361	0.81[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349863	chr10:25614571-25946379	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv550227	chr10:25843019-25865744	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25836800-25844800	Weak transcription	NH-A	brain
2	chr10:25839200-25843600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr10:25843000-25847200	Enhancers	Cortex derived primary cultured neurospheres	brain

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