Variant report

Variant	rs10828815
Chromosome Location	chr10:25811764-25811765
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:25811568..25812567-chr10:25927033..25928066,5	MCF-7	breast:
2	chr10:25811744..25812457-chr10:25926562..25927514,2	MCF-7	breast:
3	chr10:25810786..25813575-chr10:25815912..25817946,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10047266	0.87[JPT][hapmap]
rs10508699	0.87[JPT][hapmap]
rs10741092	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10741093	0.86[JPT][hapmap]
rs10764560	0.82[JPT][hapmap]
rs10828810	0.91[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10828821	0.87[JPT][hapmap]
rs10828822	0.81[JPT][hapmap]
rs10828825	0.86[JPT][hapmap]
rs11014580	0.92[CEU][hapmap];1.00[CHB][hapmap];0.96[JPT][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11014581	1.00[CHB][hapmap];0.90[JPT][hapmap];0.95[ASN][1000 genomes]
rs11014598	0.90[JPT][hapmap]
rs11014600	0.91[JPT][hapmap]
rs11014601	0.91[JPT][hapmap]
rs11014605	0.82[JPT][hapmap]
rs11014608	0.86[JPT][hapmap]
rs1329252	0.81[JPT][hapmap]
rs1335208	0.83[JPT][hapmap]
rs1335209	0.84[JPT][hapmap]
rs1887925	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1932148	1.00[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1932149	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1932150	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3886350	0.82[CHB][hapmap]
rs3923088	0.84[JPT][hapmap]
rs4459183	1.00[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4474349	0.81[JPT][hapmap]
rs4623781	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4747522	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4747525	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4749041	0.88[CEU][hapmap];0.92[EUR][1000 genomes]
rs4749042	0.92[CEU][hapmap];0.96[CHB][hapmap];0.83[JPT][hapmap];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4749043	0.92[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7077800	0.83[JPT][hapmap]
rs7086249	0.87[JPT][hapmap]
rs7100942	0.87[JPT][hapmap]
rs943984	0.92[CEU][hapmap];0.96[CHB][hapmap];0.86[JPT][hapmap];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349863	chr10:25614571-25946379	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25810600-25812200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr10:25811600-25812800	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links