Variant report

Variant	rs1887925
Chromosome Location	chr10:25792709-25792710
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:25781301..25783686-chr10:25790509..25792749,2	K562	blood:
2	chr10:25788785..25792854-chr10:25793449..25797188,3	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10047266	0.91[JPT][hapmap]
rs10508699	0.91[JPT][hapmap]
rs10741092	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10741093	0.90[JPT][hapmap]
rs10764560	0.81[JPT][hapmap]
rs10828810	0.92[CEU][hapmap];0.90[CHB][hapmap];0.93[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.88[TSI][hapmap];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10828815	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10828821	0.86[JPT][hapmap]
rs10828822	0.81[JPT][hapmap]
rs10828825	0.85[JPT][hapmap]
rs11014580	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11014581	1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs11014598	0.89[JPT][hapmap]
rs11014600	0.91[JPT][hapmap]
rs11014601	0.90[JPT][hapmap]
rs11014605	0.81[JPT][hapmap]
rs11014608	0.85[JPT][hapmap]
rs1329252	0.86[JPT][hapmap]
rs1335208	0.91[JPT][hapmap]
rs1335209	0.91[JPT][hapmap]
rs1932148	0.84[CEU][hapmap];0.81[CHB][hapmap];0.95[CHD][hapmap];0.84[GIH][hapmap];0.95[JPT][hapmap];0.80[TSI][hapmap];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1932149	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1932150	0.84[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.86[TSI][hapmap];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3886350	0.86[CHB][hapmap];0.84[CHD][hapmap];0.88[GIH][hapmap]
rs3923088	0.91[JPT][hapmap]
rs4459183	0.84[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4474349	0.89[JPT][hapmap]
rs4623781	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4747522	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4747525	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4749041	0.96[CEU][hapmap];0.94[EUR][1000 genomes]
rs4749042	0.92[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4749043	0.91[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7077800	0.91[JPT][hapmap]
rs7086249	0.91[JPT][hapmap]
rs7100942	0.91[JPT][hapmap]
rs943984	0.92[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs943985	0.81[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349863	chr10:25614571-25946379	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25783200-25797200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr10:25790400-25792800	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr10:25791200-25792800	Enhancers	Adipose Nuclei	Adipose
4	chr10:25791600-25794600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr10:25791600-25800400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr10:25791800-25794600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr10:25791800-25794800	Weak transcription	Fetal Heart	heart
8	chr10:25791800-25796800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr10:25791800-25796800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr10:25791800-25797200	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr10:25791800-25797200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr10:25791800-25797200	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr10:25791800-25797200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr10:25791800-25797200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr10:25792000-25796000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr10:25792000-25796600	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr10:25792000-25797400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr10:25792400-25797000	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr10:25792600-25797000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr10:25792600-25797000	Weak transcription	HUES48 Cell Line	embryonic stem cell

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