Variant report

Variant	rs10829155
Chromosome Location	chr10:27283190-27283191
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs12763200	0.86[ASN][1000 genomes]
rs12769694	0.86[ASN][1000 genomes]
rs12771110	0.87[ASN][1000 genomes]
rs12779034	0.87[ASN][1000 genomes]
rs12779247	0.87[ASN][1000 genomes]
rs12779577	0.87[ASN][1000 genomes]
rs12780017	0.87[ASN][1000 genomes]
rs12784807	0.86[ASN][1000 genomes]
rs34052005	0.87[ASN][1000 genomes]
rs34076423	0.86[ASN][1000 genomes]
rs34321267	0.87[ASN][1000 genomes]
rs34327621	0.87[ASN][1000 genomes]
rs34374169	0.86[ASN][1000 genomes]
rs34795543	0.86[ASN][1000 genomes]
rs34827390	0.87[ASN][1000 genomes]
rs35096435	0.86[ASN][1000 genomes]
rs35446173	0.87[ASN][1000 genomes]
rs35564547	0.86[ASN][1000 genomes]
rs35583773	0.87[ASN][1000 genomes]
rs35710580	0.87[ASN][1000 genomes]
rs35729975	0.87[ASN][1000 genomes]
rs36068675	0.87[ASN][1000 genomes]
rs3781099	0.86[ASN][1000 genomes]
rs3818634	0.87[ASN][1000 genomes]
rs56254415	0.86[ASN][1000 genomes]
rs66494764	0.86[ASN][1000 genomes]
rs66520317	0.87[ASN][1000 genomes]
rs66585308	0.86[ASN][1000 genomes]
rs66931439	0.87[ASN][1000 genomes]
rs67689270	0.84[ASN][1000 genomes]
rs68087481	0.87[ASN][1000 genomes]
rs72805468	0.87[ASN][1000 genomes]
rs72807627	0.86[ASN][1000 genomes]
rs72807629	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3365642	chr10:27274319-27283413	Weak transcription Enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27243000-27294800	Weak transcription	Liver	Liver
2	chr10:27251600-27290000	Weak transcription	Fetal Intestine Large	intestine
3	chr10:27253400-27286400	Weak transcription	Primary hematopoietic stem cells	blood
4	chr10:27255400-27286800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr10:27257600-27319000	Weak transcription	Stomach Smooth Muscle	stomach
6	chr10:27258200-27291200	Weak transcription	Left Ventricle	heart
7	chr10:27258400-27290000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr10:27269000-27293400	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr10:27270400-27291000	Weak transcription	Adipose Nuclei	Adipose
10	chr10:27273200-27290000	Weak transcription	Primary T cells from cord blood	blood
11	chr10:27277000-27284000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr10:27277000-27291000	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr10:27277800-27290200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr10:27278600-27309200	Weak transcription	HSMM	muscle
15	chr10:27278800-27286600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr10:27279800-27286200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr10:27280600-27295000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr10:27280800-27290800	Weak transcription	Ovary	ovary
19	chr10:27281400-27286200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr10:27282600-27283200	Strong transcription	Psoas Muscle	Psoas
21	chr10:27282600-27286600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr10:27283000-27291800	Weak transcription	Brain Anterior Caudate	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links