Variant report

Variant	rs35710580
Chromosome Location	chr10:27296611-27296612
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:27295657..27298267-chr10:27301288..27303718,2	K562	blood:

Variant related genes	Relation type
ENSG00000107890	Chromatin interaction

Extended variants
information (count: 80 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs10829155	0.87[ASN][1000 genomes]
rs12762165	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12763200	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12764139	0.89[AMR][1000 genomes]
rs12768409	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12769694	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12770357	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12771110	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12771194	0.83[AMR][1000 genomes]
rs12772181	0.84[AMR][1000 genomes]
rs12774303	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12774750	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12776164	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12779034	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12779247	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12779577	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12780017	0.81[AMR][1000 genomes]
rs12782501	0.89[AMR][1000 genomes]
rs12783136	0.86[AMR][1000 genomes]
rs12784807	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2274636	0.91[AMR][1000 genomes]
rs2274637	0.91[AMR][1000 genomes]
rs34015752	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34031905	0.89[AMR][1000 genomes]
rs34052005	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34056679	0.84[AMR][1000 genomes]
rs34076423	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34124770	0.86[AMR][1000 genomes]
rs34321267	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34327621	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34341620	0.89[AMR][1000 genomes]
rs34374169	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34383490	0.89[AMR][1000 genomes]
rs34452993	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs34522667	0.89[AMR][1000 genomes]
rs34677446	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs34743977	0.86[AMR][1000 genomes]
rs34759695	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs34795543	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34827390	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34905025	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35093122	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35096435	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35149458	0.83[AMR][1000 genomes]
rs35211507	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs35446173	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35462097	0.89[AMR][1000 genomes]
rs35564547	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35583773	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35591841	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35657233	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs35677484	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs35693801	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs35729975	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35844030	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs35928931	0.86[AMR][1000 genomes]
rs36045549	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs36050714	0.89[AMR][1000 genomes]
rs36068675	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3737056	0.89[AMR][1000 genomes]
rs3758438	0.89[AMR][1000 genomes]
rs3781099	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3818634	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3824689	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs56254415	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57671772	0.84[AMR][1000 genomes]
rs66494764	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs66520317	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66585308	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs66931439	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67689270	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs68087481	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71483827	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72805468	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72807627	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72807629	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72807634	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72807640	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72807644	0.86[AMR][1000 genomes]
rs72807660	0.89[AMR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs35710580	ANKRD26	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27257600-27319000	Weak transcription	Stomach Smooth Muscle	stomach
2	chr10:27278600-27309200	Weak transcription	HSMM	muscle
3	chr10:27283200-27388400	Weak transcription	Psoas Muscle	Psoas
4	chr10:27284400-27310400	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr10:27284800-27308800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr10:27285000-27319200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr10:27285400-27312000	Weak transcription	Brain Hippocampus Middle	brain
8	chr10:27285400-27319200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr10:27286200-27302600	Weak transcription	Fetal Heart	heart
10	chr10:27286400-27310000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr10:27286400-27316600	Weak transcription	Duodenum Mucosa	Duodenum
12	chr10:27286600-27311800	Weak transcription	Primary T cells fromperipheralblood	blood
13	chr10:27286600-27312000	Weak transcription	Fetal Thymus	thymus
14	chr10:27287000-27308800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr10:27287000-27312000	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr10:27287000-27350600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr10:27287200-27297400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr10:27287800-27310000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr10:27287800-27350600	Weak transcription	Aorta	Aorta
20	chr10:27288400-27329400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr10:27288600-27312000	Weak transcription	Primary T helper cells PMA-I stimulated	--
22	chr10:27288600-27312000	Weak transcription	Primary T helper cells fromperipheralblood	blood
23	chr10:27288800-27298800	Weak transcription	GM12878-XiMat	blood
24	chr10:27288800-27357000	Weak transcription	Gastric	stomach
25	chr10:27289200-27302400	Weak transcription	Right Ventricle	heart
26	chr10:27289200-27361200	Weak transcription	Brain Cingulate Gyrus	brain
27	chr10:27289600-27309800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr10:27289600-27310000	Weak transcription	HSMMtube	muscle
29	chr10:27289600-27312400	Weak transcription	Brain Substantia Nigra	brain
30	chr10:27289600-27314200	Weak transcription	Spleen	Spleen
31	chr10:27289600-27318800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr10:27289600-27360800	Weak transcription	Hela-S3	cervix
33	chr10:27289800-27360800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr10:27290200-27351400	Weak transcription	Thymus	Thymus
35	chr10:27290200-27361400	Weak transcription	Placenta	Placenta
36	chr10:27290400-27309600	Weak transcription	H9 Cell Line	embryonic stem cell
37	chr10:27290600-27300400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr10:27290600-27310000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr10:27290600-27314800	Weak transcription	Fetal Kidney	kidney
40	chr10:27290800-27326800	Weak transcription	Osteobl	bone
41	chr10:27291000-27310200	Weak transcription	HUES64 Cell Line	embryonic stem cell
42	chr10:27291000-27312200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr10:27291200-27316600	Weak transcription	H1 Cell Line	embryonic stem cell
44	chr10:27291200-27324000	Weak transcription	Rectal Mucosa Donor 29	rectum
45	chr10:27291400-27304200	Weak transcription	Fetal Muscle Leg	muscle
46	chr10:27291400-27324000	Weak transcription	Brain Germinal Matrix	brain
47	chr10:27291400-27324200	Weak transcription	Primary hematopoietic stem cells	blood
48	chr10:27291400-27360600	Weak transcription	Lung	lung
49	chr10:27291600-27304400	Weak transcription	Fetal Muscle Trunk	muscle
50	chr10:27291600-27308800	Weak transcription	Fetal Stomach	stomach

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