Variant report

Variant	rs3758438
Chromosome Location	chr10:27400661-27400662
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 128 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:128)

rs_ID	r²[population]
rs1144509	0.83[CHB][hapmap]
rs1262128	0.88[ASN][1000 genomes]
rs12762165	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12762717	0.92[ASN][1000 genomes]
rs12763200	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12763511	0.84[ASN][1000 genomes]
rs12764139	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12767796	0.90[ASN][1000 genomes]
rs12768409	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12769694	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12770357	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12771110	0.89[AMR][1000 genomes]
rs12771194	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12772181	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12772875	0.83[ASN][1000 genomes]
rs12774303	0.89[CEU][hapmap];0.81[AMR][1000 genomes]
rs12774750	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12776164	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12779034	0.89[AMR][1000 genomes]
rs12779247	0.89[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.89[AMR][1000 genomes]
rs12779577	0.89[AMR][1000 genomes]
rs12779943	0.93[CHB][hapmap];0.93[JPT][hapmap]
rs12782501	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12783012	0.93[ASN][1000 genomes]
rs12783136	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12784807	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1618826	0.82[CHB][hapmap];0.83[JPT][hapmap];0.84[ASN][1000 genomes]
rs1753387	0.84[ASN][1000 genomes]
rs1753394	0.82[CHB][hapmap];0.83[JPT][hapmap];0.84[ASN][1000 genomes]
rs1775348	0.84[ASN][1000 genomes]
rs1775354	0.84[ASN][1000 genomes]
rs1974364	0.84[ASN][1000 genomes]
rs2274636	1.00[ASW][hapmap];0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2274637	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2297146	0.93[ASN][1000 genomes]
rs2297149	0.93[ASN][1000 genomes]
rs2297150	0.93[ASN][1000 genomes]
rs2770201	0.83[CHB][hapmap]
rs2780670	0.83[CHB][hapmap]
rs2780671	0.83[CHB][hapmap]
rs2800399	0.83[CHB][hapmap]
rs34015752	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34031905	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34052005	0.89[AMR][1000 genomes]
rs34056679	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34076423	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs34111633	0.93[ASN][1000 genomes]
rs34124770	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34283610	0.93[ASN][1000 genomes]
rs34321267	0.89[AMR][1000 genomes]
rs34327621	0.89[AMR][1000 genomes]
rs34341620	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34358341	0.96[ASN][1000 genomes]
rs34374169	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs34383490	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34452993	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34522667	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34601860	0.93[ASN][1000 genomes]
rs34677446	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34743977	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34759695	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34795543	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs34827390	0.89[AMR][1000 genomes]
rs34905025	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35093122	0.81[AMR][1000 genomes]
rs35096435	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs35149458	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35175128	0.93[ASN][1000 genomes]
rs35209475	0.81[EUR][1000 genomes]
rs35211507	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35251443	0.93[ASN][1000 genomes]
rs35416395	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35446173	0.89[AMR][1000 genomes]
rs35462097	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35564547	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs35583773	0.89[AMR][1000 genomes]
rs35591841	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35657233	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35671200	0.93[ASN][1000 genomes]
rs35677484	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35693801	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35710580	0.89[AMR][1000 genomes]
rs35729975	0.89[AMR][1000 genomes]
rs35844030	1.00[ASW][hapmap];0.89[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35928931	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36045549	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs36050714	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs36068675	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs3737056	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3781099	0.89[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs3818634	0.94[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes]
rs4747595	0.81[CHB][hapmap]
rs4749219	0.94[CHB][hapmap];0.97[CHD][hapmap];0.82[ASN][1000 genomes]
rs56254415	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs57671772	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6482604	0.84[ASN][1000 genomes]
rs66494764	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs66520317	0.80[AMR][1000 genomes]
rs66585308	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs66853312	0.93[ASN][1000 genomes]
rs66931439	0.89[AMR][1000 genomes]
rs67068137	0.93[ASN][1000 genomes]
rs67262546	0.97[ASN][1000 genomes]
rs67629636	0.93[ASN][1000 genomes]
rs67689270	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs68087481	0.83[AMR][1000 genomes]
rs7078662	0.81[ASN][1000 genomes]
rs7080612	0.82[ASN][1000 genomes]
rs71483827	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72805468	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs72807627	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs72807629	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs72807634	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72807640	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72807644	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72807660	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs788199	0.83[ASN][1000 genomes]
rs788201	0.82[CHB][hapmap];0.94[CHD][hapmap];0.88[JPT][hapmap];0.83[ASN][1000 genomes]
rs788202	0.82[CHB][hapmap];0.83[JPT][hapmap];0.83[ASN][1000 genomes]
rs788203	0.87[CHB][hapmap];0.83[JPT][hapmap];0.83[ASN][1000 genomes]
rs788205	0.84[ASN][1000 genomes]
rs788207	0.84[ASN][1000 genomes]
rs788215	0.83[CHB][hapmap]
rs788216	0.83[CHB][hapmap]
rs788228	0.82[ASN][1000 genomes]
rs788230	0.88[CHB][hapmap];1.00[CHD][hapmap];0.83[JPT][hapmap];0.86[ASN][1000 genomes]
rs788232	0.86[ASN][1000 genomes]
rs9787435	1.00[ASW][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3758438	ANKRD26	cis	multi-tissue	Pritchard

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27389800-27441200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr10:27390000-27401200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr10:27390000-27406400	Weak transcription	Small Intestine	intestine
4	chr10:27390000-27408000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr10:27390000-27442000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr10:27390200-27401000	Weak transcription	Hela-S3	cervix
7	chr10:27390200-27401200	Weak transcription	Psoas Muscle	Psoas
8	chr10:27390200-27435000	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr10:27390400-27400800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr10:27390400-27400800	Weak transcription	Primary B cells from cord blood	blood
11	chr10:27390400-27401400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr10:27390400-27401400	Weak transcription	Esophagus	oesophagus
13	chr10:27390400-27401400	Weak transcription	Gastric	stomach
14	chr10:27390400-27401400	Weak transcription	Right Ventricle	heart
15	chr10:27390400-27417600	Weak transcription	Stomach Mucosa	stomach
16	chr10:27390600-27400800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr10:27393800-27438600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr10:27394000-27426600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr10:27394200-27432600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr10:27394400-27400800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr10:27394400-27401400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
22	chr10:27394400-27403400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
23	chr10:27394600-27400800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr10:27394800-27432800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr10:27395400-27437800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr10:27396200-27412800	Strong transcription	Duodenum Smooth Muscle	Duodenum
27	chr10:27396200-27425400	Strong transcription	Primary neutrophils fromperipheralblood	blood
28	chr10:27396200-27440600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr10:27396400-27418400	Strong transcription	Monocytes-CD14+_RO01746	blood
30	chr10:27396600-27401800	Strong transcription	Muscle Satellite Cultured Cells	--
31	chr10:27396600-27425400	Strong transcription	Fetal Muscle Trunk	muscle
32	chr10:27396800-27411800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr10:27396800-27432000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr10:27397000-27412600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr10:27397000-27425600	Strong transcription	HUES6 Cell Line	embryonic stem cell
36	chr10:27397600-27438600	Strong transcription	Fetal Thymus	thymus
37	chr10:27398200-27434200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr10:27398400-27401800	Strong transcription	HSMM	muscle
39	chr10:27398400-27401800	Strong transcription	NH-A	brain
40	chr10:27398400-27428400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr10:27398400-27435200	Strong transcription	HUES64 Cell Line	embryonic stem cell
42	chr10:27398600-27401800	Strong transcription	Brain Anterior Caudate	brain
43	chr10:27398600-27405000	Strong transcription	Brain Substantia Nigra	brain
44	chr10:27398600-27418800	Strong transcription	Primary monocytes fromperipheralblood	blood
45	chr10:27398600-27422000	Strong transcription	Rectal Mucosa Donor 31	rectum
46	chr10:27398600-27425000	Strong transcription	Primary T cells fromperipheralblood	blood
47	chr10:27398600-27425200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
48	chr10:27398600-27425200	Strong transcription	Fetal Intestine Large	intestine
49	chr10:27398600-27425400	Strong transcription	Rectal Mucosa Donor 29	rectum
50	chr10:27398600-27426400	Strong transcription	iPS-18 Cell Line	embryonic stem cell

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