Variant report

Variant	rs3781099
Chromosome Location	chr10:27318776-27318777
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 100 )
Associated
traits (count: 7 )

rSNPs within LD-proxies of this variant (count:100)

rs_ID	r²[population]
rs10829155	0.86[ASN][1000 genomes]
rs11015394	0.88[CEU][hapmap]
rs12218581	0.88[CEU][hapmap]
rs12219637	0.88[CEU][hapmap]
rs12220671	0.87[CEU][hapmap]
rs12572726	0.88[CEU][hapmap]
rs12573020	0.87[CEU][hapmap]
rs12762165	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12763200	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12764139	0.83[AMR][1000 genomes]
rs12768409	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12769694	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12770357	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12771110	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12772181	0.81[EUR][1000 genomes]
rs12774303	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12774750	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12776164	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12779034	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12779247	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12779577	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12779943	0.85[CEU][hapmap];0.93[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap]
rs12782501	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12783136	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12784807	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1618826	0.82[CHB][hapmap];0.83[JPT][hapmap]
rs1753394	0.82[CHB][hapmap];0.83[JPT][hapmap]
rs2274636	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2274637	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2800399	0.83[CHB][hapmap]
rs34015752	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs34031905	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34052005	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34056679	0.81[EUR][1000 genomes]
rs34076423	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34124770	0.80[AMR][1000 genomes]
rs34321267	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34327621	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34341620	0.83[AMR][1000 genomes]
rs34374169	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34383490	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs34452993	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34522667	0.83[AMR][1000 genomes]
rs34677446	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34743977	0.80[AMR][1000 genomes]
rs34759695	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34795543	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34827390	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34905025	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs35093122	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35096435	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35211507	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35446173	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35462097	0.83[AMR][1000 genomes]
rs35564547	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35583773	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35591841	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs35657233	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35677484	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35693801	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35710580	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35729975	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35844030	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35928931	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs36045549	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs36050714	0.83[AMR][1000 genomes]
rs36068675	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3737056	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3758438	0.89[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs3818634	0.89[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3824689	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3928123	0.88[CEU][hapmap]
rs4747595	0.81[CHB][hapmap]
rs4749205	0.88[CEU][hapmap]
rs4749207	0.88[CEU][hapmap]
rs4749219	0.94[CHB][hapmap];1.00[CHD][hapmap]
rs56254415	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57671772	0.81[EUR][1000 genomes]
rs66494764	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66520317	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs66585308	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66931439	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67689270	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs68087481	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs71483827	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72805468	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72807627	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72807629	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72807634	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72807640	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72807644	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72807660	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs788201	0.82[CHB][hapmap];0.90[CHD][hapmap];0.88[JPT][hapmap]
rs788202	0.82[CHB][hapmap];0.83[JPT][hapmap]
rs788203	0.87[CHB][hapmap];0.83[JPT][hapmap]
rs788215	0.83[CHB][hapmap]
rs788216	0.83[CHB][hapmap]
rs788230	0.88[CHB][hapmap];0.97[CHD][hapmap];0.83[JPT][hapmap]
rs9787430	0.88[CEU][hapmap]
rs9787435	0.88[CEU][hapmap]

mRNA abundance (count:7)

SNP	Gene	Cis/trans	Tissue	Source
rs3781099	MASTL	cis	multi-tissue	Pritchard
rs3781099	ABI1	cis	multi-tissue	Pritchard
rs3781099	ANKRD26	cis	multi-tissue	Pritchard
rs3781099	YME1L1	cis	multi-tissue	Pritchard
rs3781099	ANKRD26	cis	Liver	GTEx
rs3781099	ALCAM	trans	multi-tissue	Pritchard
rs3781099	ALCAM	cis	Liver	GTEx

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27257600-27319000	Weak transcription	Stomach Smooth Muscle	stomach
2	chr10:27283200-27388400	Weak transcription	Psoas Muscle	Psoas
3	chr10:27285000-27319200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr10:27285400-27319200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr10:27287000-27350600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr10:27287800-27350600	Weak transcription	Aorta	Aorta
7	chr10:27288400-27329400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr10:27288800-27357000	Weak transcription	Gastric	stomach
9	chr10:27289200-27361200	Weak transcription	Brain Cingulate Gyrus	brain
10	chr10:27289600-27318800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr10:27289600-27360800	Weak transcription	Hela-S3	cervix
12	chr10:27289800-27360800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr10:27290200-27351400	Weak transcription	Thymus	Thymus
14	chr10:27290200-27361400	Weak transcription	Placenta	Placenta
15	chr10:27290800-27326800	Weak transcription	Osteobl	bone
16	chr10:27291200-27324000	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr10:27291400-27324000	Weak transcription	Brain Germinal Matrix	brain
18	chr10:27291400-27324200	Weak transcription	Primary hematopoietic stem cells	blood
19	chr10:27291400-27360600	Weak transcription	Lung	lung
20	chr10:27291600-27321200	Weak transcription	Fetal Intestine Small	intestine
21	chr10:27291600-27325200	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr10:27291600-27331200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr10:27291600-27351000	Weak transcription	NHLF	lung
24	chr10:27291600-27388000	Weak transcription	Small Intestine	intestine
25	chr10:27291800-27325600	Weak transcription	Primary B cells from cord blood	blood
26	chr10:27292000-27362200	Weak transcription	Fetal Brain Male	brain
27	chr10:27292200-27334800	Weak transcription	Colon Smooth Muscle	Colon
28	chr10:27293600-27340200	Weak transcription	A549	lung
29	chr10:27295400-27319000	Weak transcription	HepG2	liver
30	chr10:27295600-27319200	Weak transcription	Ovary	ovary
31	chr10:27295600-27328800	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr10:27295600-27345800	Weak transcription	Brain Angular Gyrus	brain
33	chr10:27298800-27328800	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr10:27302000-27319000	Weak transcription	Fetal Brain Female	brain
35	chr10:27303600-27361000	Weak transcription	Rectal Smooth Muscle	rectum
36	chr10:27304800-27329000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr10:27306000-27329200	Weak transcription	Fetal Muscle Leg	muscle
38	chr10:27306000-27360800	Weak transcription	Esophagus	oesophagus
39	chr10:27306800-27329600	Weak transcription	NHEK	skin
40	chr10:27307000-27320000	Weak transcription	NHDF-Ad	bronchial
41	chr10:27308800-27320000	Weak transcription	Primary monocytes fromperipheralblood	blood
42	chr10:27309000-27319200	Weak transcription	Pancreas	Pancrea
43	chr10:27309000-27319400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr10:27309000-27326000	Weak transcription	NH-A	brain
45	chr10:27309400-27334800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
46	chr10:27310000-27321000	Weak transcription	Fetal Stomach	stomach
47	chr10:27310200-27332000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
48	chr10:27310400-27332200	Weak transcription	Fetal Heart	heart
49	chr10:27310600-27329400	Weak transcription	HSMMtube	muscle
50	chr10:27311400-27320000	Weak transcription	Fetal Muscle Trunk	muscle

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