Variant report

Variant	rs12779247
Chromosome Location	chr10:27290090-27290091
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:27276414..27278401-chr10:27289394..27292379,2	K562	blood:

Extended variants
information (count: 94 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:94)

rs_ID	r²[population]
rs10829155	0.87[ASN][1000 genomes]
rs11015394	0.88[CEU][hapmap]
rs12218581	0.88[CEU][hapmap]
rs12219637	0.88[CEU][hapmap]
rs12220671	0.87[CEU][hapmap]
rs12572726	0.88[CEU][hapmap]
rs12573020	0.87[CEU][hapmap]
rs12762165	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12763200	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12764139	0.89[AMR][1000 genomes]
rs12768409	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12769694	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12770357	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12771110	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12771194	0.83[AMR][1000 genomes]
rs12772181	0.84[AMR][1000 genomes]
rs12774303	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12774750	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12776164	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12779034	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12779577	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12779943	0.85[CEU][hapmap];0.93[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap]
rs12780017	0.81[AMR][1000 genomes]
rs12782501	0.89[AMR][1000 genomes]
rs12783136	0.86[AMR][1000 genomes]
rs12784807	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2274636	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.91[AMR][1000 genomes]
rs2274637	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes]
rs34015752	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34031905	0.89[AMR][1000 genomes]
rs34052005	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34056679	0.84[AMR][1000 genomes]
rs34076423	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34124770	0.86[AMR][1000 genomes]
rs34321267	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34327621	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34341620	0.89[AMR][1000 genomes]
rs34374169	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34383490	0.89[AMR][1000 genomes]
rs34452993	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs34522667	0.89[AMR][1000 genomes]
rs34677446	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs34743977	0.86[AMR][1000 genomes]
rs34759695	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs34795543	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34827390	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34905025	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35093122	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35096435	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35149458	0.83[AMR][1000 genomes]
rs35211507	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs35446173	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35462097	0.89[AMR][1000 genomes]
rs35564547	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35583773	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35591841	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35657233	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs35677484	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs35693801	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs35710580	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35729975	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35844030	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs35928931	0.86[AMR][1000 genomes]
rs36045549	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs36050714	0.89[AMR][1000 genomes]
rs36068675	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3737056	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes]
rs3758438	0.89[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.89[AMR][1000 genomes]
rs3781099	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3818634	0.89[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3824689	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3928123	0.88[CEU][hapmap]
rs4749205	0.88[CEU][hapmap]
rs4749207	0.88[CEU][hapmap]
rs4749219	0.94[CHB][hapmap];1.00[CHD][hapmap]
rs56254415	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57671772	0.84[AMR][1000 genomes]
rs66494764	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs66520317	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66585308	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs66931439	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67689270	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs68087481	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71483827	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72805468	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72807627	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72807629	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72807634	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72807640	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72807644	0.86[AMR][1000 genomes]
rs72807660	0.89[AMR][1000 genomes]
rs788230	0.88[CHB][hapmap];0.97[CHD][hapmap];0.83[JPT][hapmap]
rs9787430	0.88[CEU][hapmap]
rs9787435	0.88[CEU][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs12779247	ANKRD26	cis	multi-tissue	Pritchard
rs12779247	ANKRD26	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27243000-27294800	Weak transcription	Liver	Liver
2	chr10:27257600-27319000	Weak transcription	Stomach Smooth Muscle	stomach
3	chr10:27258200-27291200	Weak transcription	Left Ventricle	heart
4	chr10:27269000-27293400	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr10:27270400-27291000	Weak transcription	Adipose Nuclei	Adipose
6	chr10:27277000-27291000	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr10:27277800-27290200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr10:27278600-27309200	Weak transcription	HSMM	muscle
9	chr10:27280600-27295000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr10:27280800-27290800	Weak transcription	Ovary	ovary
11	chr10:27283000-27291800	Weak transcription	Brain Anterior Caudate	brain
12	chr10:27283200-27388400	Weak transcription	Psoas Muscle	Psoas
13	chr10:27284400-27291400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr10:27284400-27292400	Weak transcription	NHDF-Ad	bronchial
15	chr10:27284400-27310400	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr10:27284800-27308800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr10:27285000-27319200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr10:27285400-27312000	Weak transcription	Brain Hippocampus Middle	brain
19	chr10:27285400-27319200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr10:27286200-27302600	Weak transcription	Fetal Heart	heart
21	chr10:27286400-27291000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr10:27286400-27310000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr10:27286400-27316600	Weak transcription	Duodenum Mucosa	Duodenum
24	chr10:27286600-27291000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
25	chr10:27286600-27311800	Weak transcription	Primary T cells fromperipheralblood	blood
26	chr10:27286600-27312000	Weak transcription	Fetal Thymus	thymus
27	chr10:27286800-27290200	Weak transcription	Primary hematopoietic stem cells	blood
28	chr10:27286800-27293800	Weak transcription	HepG2	liver
29	chr10:27287000-27290800	Weak transcription	Fetal Stomach	stomach
30	chr10:27287000-27291000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr10:27287000-27308800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr10:27287000-27312000	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr10:27287000-27350600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr10:27287200-27297400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr10:27287400-27290400	Weak transcription	Fetal Muscle Leg	muscle
36	chr10:27287800-27310000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
37	chr10:27287800-27350600	Weak transcription	Aorta	Aorta
38	chr10:27288200-27290200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
39	chr10:27288200-27290600	Weak transcription	Fetal Muscle Trunk	muscle
40	chr10:27288200-27292000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr10:27288400-27290200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr10:27288400-27329400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr10:27288600-27290200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
44	chr10:27288600-27290200	Weak transcription	Fetal Intestine Small	intestine
45	chr10:27288600-27312000	Weak transcription	Primary T helper cells PMA-I stimulated	--
46	chr10:27288600-27312000	Weak transcription	Primary T helper cells fromperipheralblood	blood
47	chr10:27288800-27295000	Weak transcription	Rectal Mucosa Donor 31	rectum
48	chr10:27288800-27298800	Weak transcription	GM12878-XiMat	blood
49	chr10:27288800-27357000	Weak transcription	Gastric	stomach
50	chr10:27289000-27290800	Weak transcription	Primary B cells from cord blood	blood

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