Variant report

Variant	rs68087481
Chromosome Location	chr10:27310419-27310420
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10829155	0.87[ASN][1000 genomes]
rs12762165	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12763200	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12764139	0.83[AMR][1000 genomes]
rs12768409	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12769694	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12770357	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12771110	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12774303	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12774750	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12776164	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12779034	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12779247	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12779577	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12782501	0.83[AMR][1000 genomes]
rs12783136	0.91[AMR][1000 genomes]
rs12784807	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2274636	0.86[AMR][1000 genomes]
rs2274637	0.86[AMR][1000 genomes]
rs34015752	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34031905	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34052005	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34076423	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34124770	0.80[AMR][1000 genomes]
rs34321267	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34327621	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34341620	0.83[AMR][1000 genomes]
rs34374169	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34383490	0.83[AMR][1000 genomes]
rs34452993	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs34522667	0.83[AMR][1000 genomes]
rs34677446	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs34743977	0.80[AMR][1000 genomes]
rs34759695	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs34795543	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34827390	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34905025	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35093122	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35096435	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35211507	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs35446173	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35462097	0.83[AMR][1000 genomes]
rs35564547	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35583773	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35591841	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35657233	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35677484	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35693801	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35710580	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35729975	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35844030	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs35928931	0.91[AMR][1000 genomes]
rs36045549	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs36050714	0.83[AMR][1000 genomes]
rs36068675	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3737056	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3758438	0.83[AMR][1000 genomes]
rs3781099	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3818634	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3824689	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56254415	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs66494764	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs66520317	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66585308	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs66931439	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67689270	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs71483827	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72805468	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72807627	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72807629	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72807634	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72807640	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72807644	0.91[AMR][1000 genomes]
rs72807660	0.83[AMR][1000 genomes]

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27257600-27319000	Weak transcription	Stomach Smooth Muscle	stomach
2	chr10:27283200-27388400	Weak transcription	Psoas Muscle	Psoas
3	chr10:27285000-27319200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr10:27285400-27312000	Weak transcription	Brain Hippocampus Middle	brain
5	chr10:27285400-27319200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr10:27286400-27316600	Weak transcription	Duodenum Mucosa	Duodenum
7	chr10:27286600-27311800	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr10:27286600-27312000	Weak transcription	Fetal Thymus	thymus
9	chr10:27287000-27312000	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr10:27287000-27350600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr10:27287800-27350600	Weak transcription	Aorta	Aorta
12	chr10:27288400-27329400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr10:27288600-27312000	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr10:27288600-27312000	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr10:27288800-27357000	Weak transcription	Gastric	stomach
16	chr10:27289200-27361200	Weak transcription	Brain Cingulate Gyrus	brain
17	chr10:27289600-27312400	Weak transcription	Brain Substantia Nigra	brain
18	chr10:27289600-27314200	Weak transcription	Spleen	Spleen
19	chr10:27289600-27318800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr10:27289600-27360800	Weak transcription	Hela-S3	cervix
21	chr10:27289800-27360800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr10:27290200-27351400	Weak transcription	Thymus	Thymus
23	chr10:27290200-27361400	Weak transcription	Placenta	Placenta
24	chr10:27290600-27314800	Weak transcription	Fetal Kidney	kidney
25	chr10:27290800-27326800	Weak transcription	Osteobl	bone
26	chr10:27291000-27312200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr10:27291200-27316600	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr10:27291200-27324000	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr10:27291400-27324000	Weak transcription	Brain Germinal Matrix	brain
30	chr10:27291400-27324200	Weak transcription	Primary hematopoietic stem cells	blood
31	chr10:27291400-27360600	Weak transcription	Lung	lung
32	chr10:27291600-27312600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr10:27291600-27314600	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr10:27291600-27316400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr10:27291600-27321200	Weak transcription	Fetal Intestine Small	intestine
36	chr10:27291600-27325200	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr10:27291600-27331200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr10:27291600-27351000	Weak transcription	NHLF	lung
39	chr10:27291600-27388000	Weak transcription	Small Intestine	intestine
40	chr10:27291800-27325600	Weak transcription	Primary B cells from cord blood	blood
41	chr10:27292000-27362200	Weak transcription	Fetal Brain Male	brain
42	chr10:27292200-27311000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
43	chr10:27292200-27334800	Weak transcription	Colon Smooth Muscle	Colon
44	chr10:27292600-27312200	Weak transcription	Brain Anterior Caudate	brain
45	chr10:27292800-27315800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr10:27293000-27312400	Weak transcription	HUES48 Cell Line	embryonic stem cell
47	chr10:27293600-27340200	Weak transcription	A549	lung
48	chr10:27293800-27311000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr10:27294400-27314800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr10:27295400-27319000	Weak transcription	HepG2	liver

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