Variant report

Variant	rs34031905
Chromosome Location	chr10:27374280-27374281
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:27368701..27371697-chr10:27373369..27375918,2	K562	blood:
2	chr10:27372339..27374779-chr10:27377034..27379587,2	K562	blood:

Variant related genes	Relation type
ENSG00000199855	Chromatin interaction
ENSG00000107890	Chromatin interaction

Extended variants
information (count: 116 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:115)

rs_ID	r²[population]
rs1262128	0.83[ASN][1000 genomes]
rs12762165	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12762717	0.97[ASN][1000 genomes]
rs12763200	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12763511	0.81[ASN][1000 genomes]
rs12764139	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12767796	0.95[ASN][1000 genomes]
rs12768409	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12769694	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12770357	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12771110	0.89[AMR][1000 genomes]
rs12771194	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12772181	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12774303	0.81[AMR][1000 genomes]
rs12774750	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12776164	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12779034	0.89[AMR][1000 genomes]
rs12779247	0.89[AMR][1000 genomes]
rs12779577	0.89[AMR][1000 genomes]
rs12782501	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12783012	0.98[ASN][1000 genomes]
rs12783136	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12784807	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1618826	0.81[ASN][1000 genomes]
rs1753387	0.80[ASN][1000 genomes]
rs1753394	0.81[ASN][1000 genomes]
rs1775348	0.81[ASN][1000 genomes]
rs1775354	0.80[ASN][1000 genomes]
rs1974364	0.81[ASN][1000 genomes]
rs2274636	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2274637	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2297146	0.98[ASN][1000 genomes]
rs2297149	0.98[ASN][1000 genomes]
rs2297150	0.98[ASN][1000 genomes]
rs34015752	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34052005	0.89[AMR][1000 genomes]
rs34056679	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34076423	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34111633	0.98[ASN][1000 genomes]
rs34124770	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34283610	0.98[ASN][1000 genomes]
rs34321267	0.89[AMR][1000 genomes]
rs34327621	0.89[AMR][1000 genomes]
rs34341620	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34358341	0.94[ASN][1000 genomes]
rs34374169	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34383490	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34452993	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34522667	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34601860	0.98[ASN][1000 genomes]
rs34677446	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34743977	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34759695	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34795543	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34827390	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34905025	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35093122	0.81[AMR][1000 genomes]
rs35096435	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35149458	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35175128	0.98[ASN][1000 genomes]
rs35211507	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35251443	0.98[ASN][1000 genomes]
rs35416395	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35446173	0.89[AMR][1000 genomes]
rs35462097	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35564547	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35583773	0.89[AMR][1000 genomes]
rs35591841	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35657233	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35671200	0.98[ASN][1000 genomes]
rs35677484	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35693801	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35710580	0.89[AMR][1000 genomes]
rs35729975	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35844030	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35928931	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs36045549	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36050714	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs36068675	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3737056	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3758438	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3781099	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3818634	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3824689	0.89[AMR][1000 genomes]
rs4749219	0.87[ASN][1000 genomes]
rs56254415	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs57671772	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6482604	0.81[ASN][1000 genomes]
rs66494764	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs66520317	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs66585308	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs66853312	0.98[ASN][1000 genomes]
rs66931439	0.89[AMR][1000 genomes]
rs67068137	0.98[ASN][1000 genomes]
rs67262546	0.95[ASN][1000 genomes]
rs67629636	0.98[ASN][1000 genomes]
rs67689270	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs68087481	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7080612	0.87[ASN][1000 genomes]
rs71483827	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72805468	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72807627	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72807629	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72807634	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72807640	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72807644	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72807660	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs788199	0.80[ASN][1000 genomes]
rs788201	0.80[ASN][1000 genomes]
rs788202	0.80[ASN][1000 genomes]
rs788203	0.80[ASN][1000 genomes]
rs788205	0.81[ASN][1000 genomes]
rs788207	0.81[ASN][1000 genomes]
rs788230	0.83[ASN][1000 genomes]
rs788232	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894979	chr10:27325119-27375411	Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs34031905	YME1L1	Cis_1M	lymphoblastoid	RTeQTL
rs34031905	ANKRD26	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27283200-27388400	Weak transcription	Psoas Muscle	Psoas
2	chr10:27291600-27388000	Weak transcription	Small Intestine	intestine
3	chr10:27313200-27388200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr10:27313200-27388600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr10:27313400-27388400	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr10:27314600-27388800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr10:27323400-27388600	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr10:27326800-27388200	Weak transcription	Brain Substantia Nigra	brain
9	chr10:27328000-27388200	Weak transcription	K562	blood
10	chr10:27330200-27381400	Weak transcription	HSMMtube	muscle
11	chr10:27333000-27384600	Weak transcription	Fetal Heart	heart
12	chr10:27341400-27376600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr10:27350200-27387800	Weak transcription	HMEC	breast
14	chr10:27358600-27388400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr10:27360400-27378800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr10:27360400-27383800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr10:27360400-27384800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr10:27360600-27384600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr10:27361600-27388200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr10:27362200-27388400	Weak transcription	Colonic Mucosa	Colon
21	chr10:27362400-27376200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr10:27362400-27377200	Weak transcription	Hela-S3	cervix
23	chr10:27362400-27388000	Weak transcription	Right Ventricle	heart
24	chr10:27362400-27388200	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr10:27362400-27388400	Weak transcription	Pancreas	Pancrea
26	chr10:27362600-27376600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr10:27362600-27376600	Weak transcription	Ovary	ovary
28	chr10:27362600-27376600	Weak transcription	Thymus	Thymus
29	chr10:27362600-27376800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr10:27362600-27377600	Weak transcription	Rectal Smooth Muscle	rectum
31	chr10:27362600-27377800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr10:27362600-27388400	Weak transcription	Esophagus	oesophagus
33	chr10:27362600-27388400	Weak transcription	Spleen	Spleen
34	chr10:27362600-27388800	Weak transcription	Gastric	stomach
35	chr10:27362800-27382200	Weak transcription	Brain Angular Gyrus	brain
36	chr10:27362800-27388600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
37	chr10:27363000-27378000	Weak transcription	Fetal Brain Male	brain
38	chr10:27363600-27377200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr10:27364800-27377200	Weak transcription	Colon Smooth Muscle	Colon
40	chr10:27365000-27388000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
41	chr10:27365400-27374800	Strong transcription	Fetal Brain Female	brain
42	chr10:27365400-27374800	Strong transcription	Fetal Intestine Large	intestine
43	chr10:27365600-27374800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr10:27365600-27375200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr10:27365600-27375200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr10:27366400-27374400	Weak transcription	GM12878-XiMat	blood
47	chr10:27366400-27374400	Weak transcription	NH-A	brain
48	chr10:27366400-27376400	Weak transcription	HepG2	liver
49	chr10:27366400-27376600	Weak transcription	HUVEC	blood vessel
50	chr10:27366400-27377600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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