Variant report

Variant	rs35928931
Chromosome Location	chr10:27396792-27396793
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:27395462..27398841-chr10:27442023..27446304,5	K562	blood:
2	chr10:27396389..27398722-chr10:27411007..27413191,2	K562	blood:

Variant related genes	Relation type
ENSG00000136758	Chromatin interaction
ENSG00000120539	Chromatin interaction

Extended variants
information (count: 116 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:116)

rs_ID	r²[population]
rs1262128	0.88[ASN][1000 genomes]
rs12762165	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12762717	0.92[ASN][1000 genomes]
rs12763200	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12763511	0.84[ASN][1000 genomes]
rs12764139	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12767796	0.90[ASN][1000 genomes]
rs12768409	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12769694	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12770357	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12771110	0.86[AMR][1000 genomes]
rs12771194	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12772181	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12772875	0.83[ASN][1000 genomes]
rs12774750	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12776164	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12779034	0.86[AMR][1000 genomes]
rs12779247	0.86[AMR][1000 genomes]
rs12779577	0.86[AMR][1000 genomes]
rs12782501	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12783012	0.93[ASN][1000 genomes]
rs12783136	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12784807	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1618826	0.84[ASN][1000 genomes]
rs1753387	0.84[ASN][1000 genomes]
rs1753394	0.84[ASN][1000 genomes]
rs1775348	0.84[ASN][1000 genomes]
rs1775354	0.84[ASN][1000 genomes]
rs1974364	0.84[ASN][1000 genomes]
rs2274636	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2274637	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2297146	0.93[ASN][1000 genomes]
rs2297149	0.93[ASN][1000 genomes]
rs2297150	0.93[ASN][1000 genomes]
rs34015752	0.97[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34031905	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34052005	0.86[AMR][1000 genomes]
rs34056679	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34076423	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34111633	0.93[ASN][1000 genomes]
rs34124770	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34283610	0.93[ASN][1000 genomes]
rs34321267	0.86[AMR][1000 genomes]
rs34327621	0.86[AMR][1000 genomes]
rs34341620	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34358341	0.96[ASN][1000 genomes]
rs34374169	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34383490	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34452993	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34522667	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34601860	0.93[ASN][1000 genomes]
rs34677446	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34743977	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34759695	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34795543	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34827390	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs34905025	0.97[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35096435	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35149458	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35175128	0.93[ASN][1000 genomes]
rs35211507	0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35251443	0.93[ASN][1000 genomes]
rs35416395	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35446173	0.86[AMR][1000 genomes]
rs35462097	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35564547	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35583773	0.86[AMR][1000 genomes]
rs35591841	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35657233	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35671200	0.93[ASN][1000 genomes]
rs35677484	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35693801	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35710580	0.86[AMR][1000 genomes]
rs35729975	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs35844030	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs36045549	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs36050714	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs36068675	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3737056	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3758438	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3781099	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3818634	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs3824689	0.86[AMR][1000 genomes]
rs4749219	0.82[ASN][1000 genomes]
rs56254415	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs57671772	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6482604	0.84[ASN][1000 genomes]
rs66494764	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs66520317	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs66585308	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs66853312	0.93[ASN][1000 genomes]
rs66931439	0.86[AMR][1000 genomes]
rs67068137	0.93[ASN][1000 genomes]
rs67262546	0.97[ASN][1000 genomes]
rs67629636	0.93[ASN][1000 genomes]
rs67689270	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs68087481	0.91[AMR][1000 genomes]
rs7078662	0.81[ASN][1000 genomes]
rs7080612	0.82[ASN][1000 genomes]
rs71483827	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72805468	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72807627	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72807629	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72807634	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72807640	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72807644	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72807660	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs788199	0.83[ASN][1000 genomes]
rs788201	0.83[ASN][1000 genomes]
rs788202	0.83[ASN][1000 genomes]
rs788203	0.83[ASN][1000 genomes]
rs788205	0.84[ASN][1000 genomes]
rs788207	0.84[ASN][1000 genomes]
rs788228	0.82[ASN][1000 genomes]
rs788230	0.86[ASN][1000 genomes]
rs788232	0.86[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs35928931	ANKRD26	Cis_1M	lymphoblastoid	RTeQTL
rs35928931	YME1L1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27389800-27399600	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr10:27389800-27441200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr10:27390000-27396800	Weak transcription	Fetal Intestine Large	intestine
4	chr10:27390000-27396800	Weak transcription	Fetal Kidney	kidney
5	chr10:27390000-27396800	Weak transcription	A549	lung
6	chr10:27390000-27397000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr10:27390000-27398400	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr10:27390000-27398600	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr10:27390000-27398800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr10:27390000-27399200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr10:27390000-27400200	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr10:27390000-27400200	Weak transcription	HMEC	breast
13	chr10:27390000-27400600	Weak transcription	NHLF	lung
14	chr10:27390000-27401200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr10:27390000-27406400	Weak transcription	Small Intestine	intestine
16	chr10:27390000-27408000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr10:27390000-27442000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr10:27390200-27396800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr10:27390200-27396800	Weak transcription	Left Ventricle	heart
20	chr10:27390200-27396800	Weak transcription	Ovary	ovary
21	chr10:27390200-27396800	Weak transcription	NH-A	brain
22	chr10:27390200-27397000	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr10:27390200-27398000	Weak transcription	Primary monocytes fromperipheralblood	blood
24	chr10:27390200-27398600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr10:27390200-27398600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr10:27390200-27399400	Weak transcription	HUVEC	blood vessel
27	chr10:27390200-27400000	Weak transcription	Lung	lung
28	chr10:27390200-27400400	Weak transcription	K562	blood
29	chr10:27390200-27401000	Weak transcription	Hela-S3	cervix
30	chr10:27390200-27401200	Weak transcription	Psoas Muscle	Psoas
31	chr10:27390200-27435000	Weak transcription	Pancreatic Islets	Pancreatic Islet
32	chr10:27390400-27396800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr10:27390400-27398600	Weak transcription	Brain Anterior Caudate	brain
34	chr10:27390400-27398600	Weak transcription	Brain Substantia Nigra	brain
35	chr10:27390400-27398600	Weak transcription	Rectal Mucosa Donor 29	rectum
36	chr10:27390400-27398800	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr10:27390400-27399200	Weak transcription	Duodenum Mucosa	Duodenum
38	chr10:27390400-27399800	Weak transcription	Pancreas	Pancrea
39	chr10:27390400-27399800	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr10:27390400-27400000	Weak transcription	Aorta	Aorta
41	chr10:27390400-27400000	Weak transcription	Colonic Mucosa	Colon
42	chr10:27390400-27400200	Weak transcription	Brain Hippocampus Middle	brain
43	chr10:27390400-27400600	Weak transcription	Brain Cingulate Gyrus	brain
44	chr10:27390400-27400600	Weak transcription	Colon Smooth Muscle	Colon
45	chr10:27390400-27400600	Weak transcription	Rectal Smooth Muscle	rectum
46	chr10:27390400-27400600	Weak transcription	NHEK	skin
47	chr10:27390400-27400800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
48	chr10:27390400-27400800	Weak transcription	Primary B cells from cord blood	blood
49	chr10:27390400-27401400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr10:27390400-27401400	Weak transcription	Esophagus	oesophagus

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