Variant report

Variant	rs35462097
Chromosome Location	chr10:27427336-27427337
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:4)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:4 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:27425881-27429350	K562	blood:	n/a	n/a
2	POLR2A	chr10:27426812-27427565	A549	lung:	n/a	n/a
3	POLR2A	chr10:27424441-27430915	HepG2	liver:	n/a	n/a
4	SPI1	chr10:27427255-27427494	GM12891	blood:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:27415890..27418210-chr10:27426532..27429546,3	K562	blood:
2	chr10:27426913..27428893-chr10:27439764..27442698,2	MCF-7	breast:
3	chr10:27420918..27424983-chr10:27426068..27428303,5	K562	blood:
4	chr10:27425181..27427784-chr10:27528316..27531053,2	MCF-7	breast:
5	chr10:27424774..27426638-chr10:27427072..27429672,2	MCF-7	breast:

No data

Variant related genes	Relation type
YME1L1	TF binding region
ENSG00000107897	Chromatin interaction
ENSG00000136758	Chromatin interaction

Extended variants
information (count: 117 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:117)

rs_ID	r²[population]
rs1262128	0.89[ASN][1000 genomes]
rs12762165	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12762717	0.91[ASN][1000 genomes]
rs12763200	0.83[AMR][1000 genomes]
rs12763511	0.86[ASN][1000 genomes]
rs12764139	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12767796	0.88[ASN][1000 genomes]
rs12768409	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12769694	0.83[AMR][1000 genomes]
rs12770357	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12771110	0.89[AMR][1000 genomes]
rs12771194	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12772181	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12772875	0.84[ASN][1000 genomes]
rs12774303	0.81[AMR][1000 genomes]
rs12774750	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12776164	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12779034	0.89[AMR][1000 genomes]
rs12779247	0.89[AMR][1000 genomes]
rs12779577	0.89[AMR][1000 genomes]
rs12782501	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12783012	0.92[ASN][1000 genomes]
rs12783136	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12784807	0.83[AMR][1000 genomes]
rs1618826	0.86[ASN][1000 genomes]
rs1753387	0.85[ASN][1000 genomes]
rs1753394	0.86[ASN][1000 genomes]
rs1775348	0.86[ASN][1000 genomes]
rs1775354	0.85[ASN][1000 genomes]
rs1974364	0.86[ASN][1000 genomes]
rs2274636	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2274637	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2297146	0.92[ASN][1000 genomes]
rs2297149	0.92[ASN][1000 genomes]
rs2297150	0.92[ASN][1000 genomes]
rs34015752	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34031905	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34052005	0.89[AMR][1000 genomes]
rs34056679	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34076423	0.83[AMR][1000 genomes]
rs34111633	0.92[ASN][1000 genomes]
rs34124770	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34283610	0.92[ASN][1000 genomes]
rs34321267	0.89[AMR][1000 genomes]
rs34327621	0.89[AMR][1000 genomes]
rs34341620	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34358341	0.94[ASN][1000 genomes]
rs34374169	0.83[AMR][1000 genomes]
rs34383490	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34452993	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34522667	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34601860	0.92[ASN][1000 genomes]
rs34677446	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34743977	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34759695	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34795543	0.83[AMR][1000 genomes]
rs34827390	0.89[AMR][1000 genomes]
rs34905025	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35093122	0.81[AMR][1000 genomes]
rs35096435	0.83[AMR][1000 genomes]
rs35149458	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35175128	0.92[ASN][1000 genomes]
rs35211507	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35251443	0.92[ASN][1000 genomes]
rs35416395	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35446173	0.89[AMR][1000 genomes]
rs35564547	0.83[AMR][1000 genomes]
rs35583773	0.89[AMR][1000 genomes]
rs35591841	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35657233	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35671200	0.92[ASN][1000 genomes]
rs35677484	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35693801	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35710580	0.89[AMR][1000 genomes]
rs35729975	0.89[AMR][1000 genomes]
rs35844030	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35928931	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs36045549	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs36050714	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36068675	0.81[AMR][1000 genomes]
rs3737056	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3758438	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3781099	0.83[AMR][1000 genomes]
rs3818634	0.89[AMR][1000 genomes]
rs4749219	0.81[ASN][1000 genomes]
rs56254415	0.83[AMR][1000 genomes]
rs57671772	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6482604	0.86[ASN][1000 genomes]
rs66494764	0.83[AMR][1000 genomes]
rs66520317	0.80[AMR][1000 genomes]
rs66585308	0.83[AMR][1000 genomes]
rs66853312	0.92[ASN][1000 genomes]
rs66931439	0.89[AMR][1000 genomes]
rs67068137	0.92[ASN][1000 genomes]
rs67262546	0.95[ASN][1000 genomes]
rs67629636	0.92[ASN][1000 genomes]
rs67689270	0.83[AMR][1000 genomes]
rs68087481	0.83[AMR][1000 genomes]
rs7078662	0.82[ASN][1000 genomes]
rs7080612	0.81[ASN][1000 genomes]
rs71483827	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72805468	0.83[AMR][1000 genomes]
rs72807627	0.83[AMR][1000 genomes]
rs72807629	0.83[AMR][1000 genomes]
rs72807634	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72807640	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72807644	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72807660	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs788199	0.85[ASN][1000 genomes]
rs788201	0.85[ASN][1000 genomes]
rs788202	0.85[ASN][1000 genomes]
rs788203	0.85[ASN][1000 genomes]
rs788205	0.86[ASN][1000 genomes]
rs788207	0.86[ASN][1000 genomes]
rs788228	0.83[ASN][1000 genomes]
rs788230	0.87[ASN][1000 genomes]
rs788232	0.87[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs35462097	YME1L1	Cis_1M	lymphoblastoid	RTeQTL
rs35462097	ANKRD26	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27389800-27441200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr10:27390000-27442000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:27390200-27435000	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr10:27393800-27438600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr10:27394200-27432600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr10:27394800-27432800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr10:27395400-27437800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr10:27396200-27440600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr10:27396800-27432000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr10:27397600-27438600	Strong transcription	Fetal Thymus	thymus
11	chr10:27398200-27434200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr10:27398400-27428400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr10:27398400-27435200	Strong transcription	HUES64 Cell Line	embryonic stem cell
14	chr10:27398600-27427800	Strong transcription	Adipose Nuclei	Adipose
15	chr10:27398600-27431600	Strong transcription	HUES48 Cell Line	embryonic stem cell
16	chr10:27398600-27434800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr10:27398600-27434800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
18	chr10:27398600-27434800	Strong transcription	Primary T helper cells PMA-I stimulated	--
19	chr10:27398600-27436400	Strong transcription	Dnd41	blood
20	chr10:27398800-27427600	Strong transcription	Fetal Lung	lung
21	chr10:27398800-27438200	Strong transcription	Primary T helper cells fromperipheralblood	blood
22	chr10:27398800-27438200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr10:27399000-27431400	Strong transcription	Placenta	Placenta
24	chr10:27399600-27435200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr10:27399600-27438400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr10:27399800-27438600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr10:27400400-27438400	Strong transcription	Liver	Liver
28	chr10:27401200-27435400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr10:27403000-27428400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr10:27403200-27431600	Strong transcription	NH-A	brain
31	chr10:27405800-27427600	Strong transcription	HSMM	muscle
32	chr10:27407800-27436400	Weak transcription	Right Ventricle	heart
33	chr10:27411200-27436000	Weak transcription	Esophagus	oesophagus
34	chr10:27412400-27440200	Weak transcription	Fetal Heart	heart
35	chr10:27413600-27430800	Strong transcription	Duodenum Smooth Muscle	Duodenum
36	chr10:27415400-27436200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr10:27416800-27430800	Strong transcription	HUVEC	blood vessel
38	chr10:27418000-27436400	Weak transcription	Spleen	Spleen
39	chr10:27418200-27430000	Weak transcription	Pancreas	Pancrea
40	chr10:27419200-27438600	Strong transcription	Monocytes-CD14+_RO01746	blood
41	chr10:27419200-27438800	Strong transcription	Primary monocytes fromperipheralblood	blood
42	chr10:27419400-27441400	Weak transcription	Stomach Mucosa	stomach
43	chr10:27419800-27436200	Weak transcription	Gastric	stomach
44	chr10:27421000-27430800	Weak transcription	Hela-S3	cervix
45	chr10:27421000-27436200	Weak transcription	Fetal Brain Male	brain
46	chr10:27421200-27430000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
47	chr10:27421800-27428800	Weak transcription	Fetal Intestine Small	intestine
48	chr10:27421800-27431600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr10:27423400-27436400	Weak transcription	Colonic Mucosa	Colon
50	chr10:27423600-27430000	Weak transcription	Brain Inferior Temporal Lobe	brain

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