Variant report

Variant	rs10831065
Chromosome Location	chr11:93325294-93325295
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10741466	0.83[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs11020425	0.86[ASN][1000 genomes]
rs1939562	0.86[ASN][1000 genomes]
rs2155242	0.83[ASN][1000 genomes]
rs4753481	0.86[ASN][1000 genomes]
rs4753482	0.80[ASN][1000 genomes]
rs4753483	0.80[ASN][1000 genomes]
rs5025292	0.87[ASN][1000 genomes]
rs68159082	0.83[ASN][1000 genomes]
rs7108404	0.86[ASN][1000 genomes]
rs7130903	0.83[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs7940519	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv1039623	chr11:93141461-93328739	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10831065	MED17	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93323200-93329000	Weak transcription	Fetal Intestine Small	intestine
2	chr11:93324200-93325400	Enhancers	HepG2	liver
3	chr11:93324400-93325400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr11:93324400-93325400	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr11:93324400-93325800	Enhancers	GM12878-XiMat	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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