Variant report

Variant	rs4753481
Chromosome Location	chr11:93320916-93320917
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10741466	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10831065	0.86[ASN][1000 genomes]
rs11020425	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1939562	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2155242	0.90[ASN][1000 genomes]
rs4388844	0.83[EUR][1000 genomes]
rs4753482	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4753483	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs5025292	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs68159082	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7108404	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7130903	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7940754	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv1039623	chr11:93141461-93328739	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4753481	MED17	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93319200-93323200	Enhancers	Stomach Mucosa	stomach
2	chr11:93319400-93324400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr11:93319600-93324400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr11:93320200-93321200	Enhancers	K562	blood
5	chr11:93320400-93322000	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr11:93320400-93322400	Enhancers	Gastric	stomach
7	chr11:93320400-93322800	Enhancers	HepG2	liver
8	chr11:93320400-93324400	Weak transcription	A549	lung
9	chr11:93320600-93321000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr11:93320600-93323400	Enhancers	Rectal Mucosa Donor 31	rectum
11	chr11:93320800-93321600	Enhancers	Pancreas	Pancrea

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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