Variant report

Variant	rs7940754
Chromosome Location	chr11:93345679-93345680
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10741466	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10831059	0.90[EUR][1000 genomes]
rs11020425	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11822585	0.86[CEU][hapmap];0.81[EUR][1000 genomes]
rs1939562	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1939573	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2155242	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2399689	0.90[EUR][1000 genomes]
rs4388844	0.99[EUR][1000 genomes]
rs4753481	0.82[EUR][1000 genomes]
rs4753482	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4753483	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs5025292	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs57014027	0.86[ASN][1000 genomes]
rs58018625	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58172303	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs58671261	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61743303	0.81[EUR][1000 genomes]
rs6483253	0.90[EUR][1000 genomes]
rs67112133	0.81[EUR][1000 genomes]
rs67182840	0.81[EUR][1000 genomes]
rs67257421	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs67310816	0.81[EUR][1000 genomes]
rs67437695	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs67773478	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs68159082	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7108404	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7109236	0.86[CEU][hapmap];0.88[GIH][hapmap];0.86[TSI][hapmap]
rs7115759	0.86[CEU][hapmap];0.81[EUR][1000 genomes]
rs7130903	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7131178	0.81[GIH][hapmap]
rs72970943	0.90[EUR][1000 genomes]
rs72970947	0.90[EUR][1000 genomes]
rs72972624	0.88[EUR][1000 genomes]
rs7929512	0.90[EUR][1000 genomes]
rs7930516	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7939577	0.86[CEU][hapmap];0.88[GIH][hapmap];0.81[TSI][hapmap];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7940754	MED17	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93342800-93346800	Enhancers	Fetal Intestine Large	intestine
2	chr11:93343200-93346600	Enhancers	Rectal Mucosa Donor 31	rectum
3	chr11:93343200-93346600	Enhancers	Stomach Mucosa	stomach
4	chr11:93344200-93346800	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr11:93344400-93346200	Enhancers	Liver	Liver
6	chr11:93344400-93346600	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr11:93344400-93347600	Enhancers	Fetal Intestine Small	intestine
8	chr11:93344600-93346400	Weak transcription	Small Intestine	intestine
9	chr11:93344800-93347400	Weak transcription	Gastric	stomach
10	chr11:93345000-93346800	Enhancers	Duodenum Mucosa	Duodenum
11	chr11:93345400-93345800	Enhancers	Fetal Kidney	kidney
12	chr11:93345600-93345800	Enhancers	Rectal Mucosa Donor 29	rectum

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