Variant report

Variant	rs2399689
Chromosome Location	chr11:93304504-93304505
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:93298565..93302751-chr11:93303785..93308130,4	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10741466	0.88[EUR][1000 genomes]
rs10831059	1.00[EUR][1000 genomes]
rs11020425	0.88[EUR][1000 genomes]
rs11602472	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1939562	0.88[EUR][1000 genomes]
rs1939573	0.85[EUR][1000 genomes]
rs2155242	0.85[EUR][1000 genomes]
rs2399678	0.84[AFR][1000 genomes]
rs2399687	0.98[AFR][1000 genomes]
rs4388844	0.92[EUR][1000 genomes]
rs4753087	0.82[YRI][hapmap];0.86[AFR][1000 genomes]
rs4753469	0.82[YRI][hapmap]
rs4753478	0.80[CEU][hapmap]
rs4753479	0.98[AFR][1000 genomes]
rs4753482	0.90[EUR][1000 genomes]
rs4753483	0.90[EUR][1000 genomes]
rs5025292	0.94[EUR][1000 genomes]
rs58018625	0.81[EUR][1000 genomes]
rs6483253	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67773478	0.85[EUR][1000 genomes]
rs68159082	0.92[EUR][1000 genomes]
rs7108404	0.92[EUR][1000 genomes]
rs7111644	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs7127955	0.93[AFR][1000 genomes]
rs7130903	0.84[EUR][1000 genomes]
rs72966993	1.00[ASN][1000 genomes]
rs72966998	1.00[ASN][1000 genomes]
rs72970943	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72970947	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72972624	0.91[EUR][1000 genomes]
rs7929512	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7940754	0.93[CEU][hapmap];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv1039623	chr11:93141461-93328739	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93300200-93305200	Enhancers	Liver	Liver
2	chr11:93300800-93305000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr11:93301000-93304600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr11:93301000-93306400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr11:93302200-93310400	Weak transcription	Psoas Muscle	Psoas
6	chr11:93302800-93305200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr11:93302800-93305800	Enhancers	A549	lung
8	chr11:93303000-93304600	Enhancers	Pancreatic Islets	Pancreatic Islet
9	chr11:93303000-93304800	Enhancers	Fetal Intestine Large	intestine
10	chr11:93303000-93305800	Enhancers	HepG2	liver
11	chr11:93303400-93304800	Enhancers	Adipose Nuclei	Adipose
12	chr11:93303400-93305200	Enhancers	Duodenum Mucosa	Duodenum
13	chr11:93303600-93304600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr11:93303600-93304800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr11:93303600-93305200	Enhancers	Fetal Intestine Small	intestine
16	chr11:93303800-93304600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr11:93303800-93304600	Enhancers	Muscle Satellite Cultured Cells	--
18	chr11:93303800-93304600	Enhancers	Skeletal Muscle Female	skeletal muscle
19	chr11:93303800-93304600	Flanking Active TSS	Hela-S3	cervix
20	chr11:93303800-93304600	Enhancers	Osteobl	bone
21	chr11:93304000-93304800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr11:93304000-93305200	Enhancers	Pancreas	Pancrea
23	chr11:93304000-93305400	Enhancers	Placenta	Placenta
24	chr11:93304200-93304600	Enhancers	Fetal Kidney	kidney
25	chr11:93304200-93304600	Enhancers	Rectal Mucosa Donor 31	rectum
26	chr11:93304200-93304800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr11:93304200-93305600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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