Variant report
| Variant | rs72972624 |
|---|---|
| Chromosome Location | chr11:93352842-93352843 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr11:93351079..93352996-chr11:93355516..93357214,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10741466 | 0.82[EUR][1000 genomes] |
| rs10831059 | 0.91[EUR][1000 genomes] |
| rs11020425 | 0.82[EUR][1000 genomes] |
| rs1939562 | 0.82[EUR][1000 genomes] |
| rs1939573 | 0.93[EUR][1000 genomes] |
| rs2155242 | 0.83[EUR][1000 genomes] |
| rs2399689 | 0.91[EUR][1000 genomes] |
| rs4388844 | 0.86[EUR][1000 genomes] |
| rs4753482 | 0.88[EUR][1000 genomes] |
| rs4753483 | 0.88[EUR][1000 genomes] |
| rs5025292 | 0.89[EUR][1000 genomes] |
| rs58018625 | 0.88[EUR][1000 genomes] |
| rs58172303 | 0.82[EUR][1000 genomes] |
| rs58671261 | 0.82[EUR][1000 genomes] |
| rs6483253 | 0.91[EUR][1000 genomes] |
| rs67257421 | 0.82[EUR][1000 genomes] |
| rs67437695 | 0.82[EUR][1000 genomes] |
| rs67773478 | 0.93[EUR][1000 genomes] |
| rs68159082 | 0.86[EUR][1000 genomes] |
| rs7108404 | 0.86[EUR][1000 genomes] |
| rs72970943 | 0.84[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs72970947 | 0.84[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs7929512 | 0.91[EUR][1000 genomes] |
| rs7930516 | 0.82[EUR][1000 genomes] |
| rs7940754 | 0.88[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv898181 | chr11:93072843-93662459 | Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 119 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:93348000-93357800 | Weak transcription | ES-WA7 Cell Line | embryonic stem cell |
