Variant report

Variant	rs67773478
Chromosome Location	chr11:93355437-93355438
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:92969485..92970477-chr11:93354947..93355840,3	MCF-7	breast:
2	chr11:92969639..92970193-chr11:93354991..93355840,3	MCF-7	breast:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10741466	0.89[EUR][1000 genomes]
rs10831059	0.85[EUR][1000 genomes]
rs11020425	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11822585	0.87[EUR][1000 genomes]
rs1939562	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1939573	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2155242	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2399689	0.85[EUR][1000 genomes]
rs4388844	0.93[EUR][1000 genomes]
rs4753482	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4753483	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs5025292	0.90[EUR][1000 genomes]
rs57014027	0.82[ASN][1000 genomes]
rs58018625	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58172303	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs58671261	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61743303	0.87[EUR][1000 genomes]
rs6483253	0.85[EUR][1000 genomes]
rs67112133	0.87[EUR][1000 genomes]
rs67182840	0.87[EUR][1000 genomes]
rs67257421	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs67310816	0.87[EUR][1000 genomes]
rs67437695	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs67749053	0.84[EUR][1000 genomes]
rs68159082	0.93[EUR][1000 genomes]
rs7108404	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7109236	0.81[EUR][1000 genomes]
rs7115759	0.87[EUR][1000 genomes]
rs7130903	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72970943	0.85[EUR][1000 genomes]
rs72970947	0.85[EUR][1000 genomes]
rs72972624	0.93[EUR][1000 genomes]
rs7929512	0.85[EUR][1000 genomes]
rs7930516	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7939577	0.87[EUR][1000 genomes]
rs7940754	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93348000-93357800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr11:93354600-93355600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr11:93355400-93357400	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr11:93355400-93357400	Enhancers	Monocytes-CD14+_RO01746	blood
5	chr11:93355400-93359200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links