Variant report

Variant	rs2155242
Chromosome Location	chr11:93327340-93327341
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10741466	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10831059	0.85[EUR][1000 genomes]
rs10831065	0.83[ASN][1000 genomes]
rs11020416	0.81[CHB][hapmap]
rs11020425	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11822585	0.87[CEU][hapmap]
rs1939562	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1939573	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2399689	0.85[EUR][1000 genomes]
rs4388844	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4753481	0.90[ASN][1000 genomes]
rs4753482	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4753483	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs5025292	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58018625	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6483253	0.85[EUR][1000 genomes]
rs67773478	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs68159082	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7108404	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7109236	0.86[CEU][hapmap]
rs7115759	0.87[CEU][hapmap]
rs7130903	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72970943	0.85[EUR][1000 genomes]
rs72970947	0.85[EUR][1000 genomes]
rs72972624	0.83[EUR][1000 genomes]
rs7929512	0.85[EUR][1000 genomes]
rs7939577	0.86[CEU][hapmap]
rs7940519	0.85[ASN][1000 genomes]
rs7940754	1.00[CEU][hapmap];0.84[CHB][hapmap];0.94[JPT][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv1039623	chr11:93141461-93328739	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	esv3413360	chr11:93325554-93328002	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2155242	MED17	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93323200-93329000	Weak transcription	Fetal Intestine Small	intestine

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